LOC113532348 (LOC108257934,LOC108257933,LOC105939654,LOC103139239,LOC106916846)


Basic Information

Item Value
gene id LOC113532348
gene name LOC108257934,LOC108257933,LOC105939654,LOC103139239,LOC106916846
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 10217742 ~ 10219584 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923698.1
CATAAATAGGAGTGTGAACTGAGATCCTCATTGTAGGTGATCAACAGCCATCATGAGGTCTCTGGTCCTGCTTTTGCTTGTGGGAGCTTGTTttgcTCTGGAGGATGACAAGATTGTTGGAGGGTATGAGTGCACACCCTACTCCCAGCCCTGGCAAGTGTCTCTGAACGCTGGCTACCATTTCTGTGGTGGTTCTCTGATCAATCAGAACTGGGTTGTGTCTGCTGCTCACTGCTATAAATCTCGTCTGGAGGTTCGTTTGGGAGAGCACCATATCCAGATTAATGAGGGTACTGAGCAGTTCATCTCCTCGTCTCGCGTCATCCGCCATCCCAGCTATAACTCTGCGACCGTTGACAGTGACATCATGCTTATCAAGCTGAGTCAACCTGCCACCCTGAACAACTATGTGCAGCCTGTTGCACTGCCTAAAAGCTGCCCCCCTGCGGGTACTTGGTGCACAGTCTCTGGATGGGGAAACACCATGAGTGCCACTGCTGATCGCAACAAGCTGCAATGTGTGGAGGTGCCTATTCTCTCTGACAAGGATTGTAAAAACTCTTATCCTGGTATGATCACTAATTCCATGTTCTGTGCTGGCTTCCTGGAGGGAGGCAAGGACTCTTGCCAGGGTGACTCTGGTGGCCCTGTGGTGTGCAACGGTGAGCTGCAGGGTGTTGTGTCTTGGGGCTATGGCTGTGCTGAGAAGAATCACCCTGGTGTCTATGCCAAGGTCTGTATTTTCACCAGCTGGATTTCCCAAACAATGGCCAGCAATTGAATCTGCTCCAGCCCACTTTACACAATTCAACAACACATTGTGAAATCCAACaccaaaatattcaaataaaaccTCCTGAAGGAATAAAACTAT

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG:

id description
K01312 PRSS1_2_3; trypsin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923698.1 True 874 mRNA 0.49 6 10217742 10219584

Neighbor

gene id symbol gene type direction distance location
LOC113532347 LOC108257934,LOC108257933,LOC106674865,LOC101066992,LOC103389000 coding downstream 10128 10206021 ~ 10207614 (-)
stx11b.1 LOC108257894,LOC103032305 coding downstream 82416 10132583 ~ 10135326 (-)
irf4b irf4,LOC108257893 coding downstream 88658 10124288 ~ 10129084 (-)
foxq1b LOC108257547 coding downstream 161001 10055133 ~ 10056741 (-)
foxf2b LOC108257536 coding downstream 170446 10044282 ~ 10047296 (-)
LOC113532350 LOC108257934,LOC108257933 coding upstream 5867 10225451 ~ 10227811 (-)
thbs1b thbs1,thbs1b,LOC103031445,LOC108410805,LOC107671781,LOC107721311,LOC107549089 coding upstream 37912 10257496 ~ 10267700 (-)
chrm5b chrm5 coding upstream 161335 10380919 ~ 10395762 (-)
ryr3 ryr3 coding upstream 192461 10412045 ~ 10495693 (-)
grem1a grem1 coding upstream 308245 10527829 ~ 10530453 (-)
LOC117599775 NA non-coding downstream 21461 10187821 ~ 10196281 (-)
LOC117599728 NA non-coding downstream 37053 10179966 ~ 10180689 (-)
G293082 NA non-coding downstream 189739 10027305 ~ 10028003 (-)
G293057 gmds non-coding downstream 191893 9977852 ~ 10025849 (-)
LOC117599790 NA non-coding downstream 285971 9930895 ~ 9931771 (-)
G293276 NA non-coding upstream 26498 10246082 ~ 10246502 (-)
G293296 NA non-coding upstream 96074 10315658 ~ 10315869 (-)
G293315 NA non-coding upstream 138913 10358497 ~ 10359101 (-)
G293316 NA non-coding upstream 139639 10359223 ~ 10359468 (-)
LOC117599772 NA non-coding upstream 143421 10363005 ~ 10374556 (-)
lrfn2b LOC108257564,LOC106582474 other downstream 349101 9750991 ~ 9868641 (-)
LOC113545371 NA other downstream 374270 9843369 ~ 9843472 (-)
znf410 LOC108258012,LOC108411620,LOC103043020,LOC103375802,LOC107659809 other downstream 701565 9508581 ~ 9516177 (-)
LOC113545281 samd15 other downstream 726472 9488218 ~ 9491270 (-)
fkbp1b fkbp1b other downstream 1619575 8584193 ~ 8598167 (-)
LOC113531858 scg5,LOC107756590,LOC107601900,LOC107721307,LOC107549096 other upstream 312410 10531994 ~ 10538106 (-)
G293480 NA other upstream 461726 10681310 ~ 10681690 (-)
id2b LOC108257525 other upstream 524055 10743639 ~ 10746759 (-)
saysd1 saysd1 other upstream 1849385 12068969 ~ 12075508 (-)
LOC113532050 LOC108257549 other upstream 1875834 12095418 ~ 12219424 (-)

Expression


Co-expression Network