allc (allc)


Basic Information

Item Value
gene id allc
gene name allc
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 11006332 ~ 11013132 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923417.2
AGTAAACACAGTTTTTCCACCTGAAAAACTCAGTAGGACGAGAAAGAAGCATTTTTTTCCTGGCAATCCTCAAGGGCTTATAACAATTTTTGAAGCATTTCACATTGAGGATGGCAAACCGATCAGCTGTGAAATTGAACTCCGGTCAACCAGATTTTGTGCAGTTTAACAATCTTGCGTGTGAAACAGCAGGAGGAAAGGTGATTTTTGCGACAGATGAGTGGTTTGCTCCTGCTCGAAATCTCTTGAAGAAGGAGCCTGCAGAGTTCCTTGCCTCAGCTTTCACTGAGTTTGGGAAATGGATGGACGGTTGGGAAACAAGAAGGAAAAGAATACCAGGTCATGACTGGTGCATTGTGCAGTTGGGAGTTCCTGGTGTCATTCATGGCTTTGATGTGGACACGTCGTTCTTCACAGGAAACTATGCGCCTTCCATTTCTATTCAGGCTGCCTGTCTCGATGGACTGTCTGTGCCGTCTTTAGTTCTTGAGGGAGACCGTACAGGTATGGCTGCTTCAGAGAGCCAGTTTGAAGCTGTGGCACAGCTTCACTCAGAGAGCTGGGACGAGATTGTACCAGTGACAATGCTGAAGCCTGGATACTCTGATTCCTGTCACAACTTCTTCAGTGTTACCTTCCCCCATCGAGTCACCCACATCCGCTTGAACATGTATCCTgATGGAGGTATTGCGAGATTGCGAGTGTATGGGGTTGGACAAAGAGACTGGTCCAGTGCACTCAGTCAGGAGGAAATAGATCTTGTCGCACTGGTCAATGGCGGAGTGTGTGTGGGCTACAGCGATGCGCATTTCGGTCACCCACGCAACATGATCAGCTTGGGAAGAGCTGACAACATGGCCGATGGGTGGGAGACAGCGCGACGCCTGGATCGTCCCAAAGTGTTGAAAATAGACAAGAAGGGGATTTTGCAGGTCCCTGGATTTGAGTGGGCCGTCTTCAGACTTGGGCATCCTGGTGTGATAAGCAAAATTGAGATAGACAccaatcattttaaagGTAATTTTCCTGACTGGTGTAAAATTGAGGCCTGTAGTTTAACCCCAGAGGAGGAGCAAACCTATACAAGGCACAAGTGGAGCAGTGACAAAGGTCCCGCTTGGAAAATGCTTCTTCTTCCTCAGAAAcTGAAGCCTCACTACAGGCACTTGTACTCTGGAGAGTGTGTACTGCAGTGTGGGTGTGTAAGTCATGTGAGGCTCGTAATTGCTCCTGATGGAGGGGTCAGCCGGCTCAGACTCTGGGGTCACATCATCTCCAACACCTCAACTAATCCTCATCAAATCTCAAAACTCTGACCCATAAAACTACAGCAGAGTGGTCTGATTGCACAGAACCACTTaggtgacatggtggttattttttaataagaggTTTTTATGATGAACCTATTAAAAACCACAAGTTAAGTTTCTCGAGATCTGTTCTGTGGCTTATAGCAATTCTTGTATAATAaaatgagtgagacagagaaataaaTTGAATTAGACCACTGTGACCATAGGGACCTAAGCATGGAGATGACATAATATTACACTCGTTCCTGCCTAATAGTTAACTGGAGGTAATTGAGTATTCGTTTCCTGCAGCATATTAAGACATGGGCTCAAGTTACACAATTTGTGGACATGGCACAATAATGTGTGGCCATTAAATACTTAGTTTGTGGCTTTGAAATATGAACTTTTTAGCAGCTTATTAAAAAATGGCACCTCCGTGGAATATTAGGAACATTTTTCTGCCAGTGTTACATCAAGGCAGCTGGATTTGTGTTATGAAATCCGTCAAAGTTCAGAAGCTTCAAATTTTTTGAGTCTTCAAGATTATAACTCCAGGTCCAGTTGTCTTGACTTACTACTAATAGACATTCAGAAATGCCCTAgataattacacattttaagcTGCATTATAAGCACTTTTGACTGAtaagtaagaaaataattagCTTAATTGTATTTAGAGATTGACTGTACAATAATTACAATatgaaattaaaggaaataaatactGCCT
>XM_026923418.2
AGTAAACACAGTTTTTCCACCTGAAAAACTCAGTAGGACGAGAAAGAAGCATTTTTTTCCTGGCAATCCTCAAGGGCTTATAACAATTTTTGAAGCATTTCACATTGAGGATGGCAAACCGATCAGCTGTGAAATTGAACTCCGGTCAACCAGATTTTGTGCAGTTTAACAATCTTGCGTGTGAAACAGCAGGAGGAAAGGTGATTTTTGCGACAGATGAGTGGTTTGCTCCTGCTCGAAATCTCTTGAAGGAGCCTGCAGAGTTCCTTGCCTCAGCTTTCACTGAGTTTGGGAAATGGATGGACGGTTGGGAAACAAGAAGGAAAAGAATACCAGGTCATGACTGGTGCATTGTGCAGTTGGGAGTTCCTGGTGTCATTCATGGCTTTGATGTGGACACGTCGTTCTTCACAGGAAACTATGCGCCTTCCATTTCTATTCAGGCTGCCTGTCTCGATGGACTGTCTGTGCCGTCTTTAGTTCTTGAGGGAGACCGTACAGGTATGGCTGCTTCAGAGAGCCAGTTTGAAGCTGTGGCACAGCTTCACTCAGAGAGCTGGGACGAGATTGTACCAGTGACAATGCTGAAGCCTGGATACTCTGATTCCTGTCACAACTTCTTCAGTGTTACCTTCCCCCATCGAGTCACCCACATCCGCTTGAACATGTATCCTgATGGAGGTATTGCGAGATTGCGAGTGTATGGGGTTGGACAAAGAGACTGGTCCAGTGCACTCAGTCAGGAGGAAATAGATCTTGTCGCACTGGTCAATGGCGGAGTGTGTGTGGGCTACAGCGATGCGCATTTCGGTCACCCACGCAACATGATCAGCTTGGGAAGAGCTGACAACATGGCCGATGGGTGGGAGACAGCGCGACGCCTGGATCGTCCCAAAGTGTTGAAAATAGACAAGAAGGGGATTTTGCAGGTCCCTGGATTTGAGTGGGCCGTCTTCAGACTTGGGCATCCTGGTGTGATAAGCAAAATTGAGATAGACAccaatcattttaaagGTAATTTTCCTGACTGGTGTAAAATTGAGGCCTGTAGTTTAACCCCAGAGGAGGAGCAAACCTATACAAGGCACAAGTGGAGCAGTGACAAAGGTCCCGCTTGGAAAATGCTTCTTCTTCCTCAGAAAcTGAAGCCTCACTACAGGCACTTGTACTCTGGAGAGTGTGTACTGCAGTGTGGGTGTGTAAGTCATGTGAGGCTCGTAATTGCTCCTGATGGAGGGGTCAGCCGGCTCAGACTCTGGGGTCACATCATCTCCAACACCTCAACTAATCCTCATCAAATCTCAAAACTCTGACCCATAAAACTACAGCAGAGTGGTCTGATTGCACAGAACCACTTaggtgacatggtggttattttttaataagaggTTTTTATGATGAACCTATTAAAAACCACAAGTTAAGTTTCTCGAGATCTGTTCTGTGGCTTATAGCAATTCTTGTATAATAaaatgagtgagacagagaaataaaTTGAATTAGACCACTGTGACCATAGGGACCTAAGCATGGAGATGACATAATATTACACTCGTTCCTGCCTAATAGTTAACTGGAGGTAATTGAGTATTCGTTTCCTGCAGCATATTAAGACATGGGCTCAAGTTACACAATTTGTGGACATGGCACAATAATGTGTGGCCATTAAATACTTAGTTTGTGGCTTTGAAATATGAACTTTTTAGCAGCTTATTAAAAAATGGCACCTCCGTGGAATATTAGGAACATTTTTCTGCCAGTGTTACATCAAGGCAGCTGGATTTGTGTTATGAAATCCGTCAAAGTTCAGAAGCTTCAAATTTTTTGAGTCTTCAAGATTATAACTCCAGGTCCAGTTGTCTTGACTTACTACTAATAGACATTCAGAAATGCCCTAgataattacacattttaagcTGCATTATAAGCACTTTTGACTGAtaagtaagaaaataattagCTTAATTGTATTTAGAGATTGACTGTACAATAATTACAATatgaaattaaaggaaataaatactGCCT

Function

symbol description
allc Predicted to enable allantoicase activity. Predicted to be involved in allantoin catabolic process. Predicted to act upstream of or within purine nucleobase metabolic process. Orthologous to human ALLC (allantoicase).

NR:

description
probable allantoicase

GO:

id name namespace
GO:0006144 purine nucleobase metabolic process biological_process
GO:0000256 allantoin catabolic process biological_process
GO:0004037 allantoicase activity molecular_function

KEGG:

id description
K01477 alc, ALLC; allantoicase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923417.2 True 2031 mRNA 0.43 11 11006332 11013132
XM_026923418.2 False 2028 mRNA 0.43 11 11006332 11013132

Neighbor

gene id symbol gene type direction distance location
sox11b LOC108258189 coding downstream 131965 10871952 ~ 10874367 (-)
rnf144ab rnf144ab,LOC108411012 coding downstream 213742 10778685 ~ 10792590 (-)
si:ch211-195d17.2 LOC108257787 coding downstream 325116 10673520 ~ 10681216 (-)
cpsf3 cpsf3,LOC107756584,LOC107668237,LOC107693240,LOC107549104,LOC107601862 coding downstream 358578 10638966 ~ 10647754 (-)
taf1b taf1b coding downstream 422781 10572786 ~ 10583551 (-)
rps7 rps7,LOC107668222 coding upstream 5270 11018402 ~ 11024886 (-)
hebp2 LOC108257783,LOC108411258 coding upstream 265322 11278454 ~ 11284551 (-)
kif25 kif25 coding upstream 272031 11285163 ~ 11295830 (-)
acat2 acat2,LOC107732634,LOC107549121,LOC107601581,LOC107696107,LOC107693222,LOC107726488,LOC102788057 coding upstream 283858 11296990 ~ 11305227 (-)
wtap wtap,LOC107726473,LOC107549122,LOC107732643 coding upstream 292611 11305743 ~ 11314528 (-)
G293515 NA non-coding downstream 129976 10876133 ~ 10876356 (-)
G293514 NA non-coding downstream 130663 10875448 ~ 10875669 (-)
G293513 NA non-coding downstream 131585 10874523 ~ 10874747 (-)
G293412 ywhaq,LOC107721301,LOC107549101,LOC108436740,LOC107756586 non-coding downstream 394837 10609935 ~ 10611495 (-)
G293374 NA non-coding downstream 467693 10538426 ~ 10538639 (-)
LOC113532439 NA non-coding upstream 6055 11019187 ~ 11019407 (-)
G293531 NA non-coding upstream 7447 11020579 ~ 11022955 (-)
LOC113532434 NA non-coding upstream 7490 11020622 ~ 11020842 (-)
LOC113532435 NA non-coding upstream 7954 11021086 ~ 11021306 (-)
LOC113532433 NA non-coding upstream 9589 11022721 ~ 11022941 (-)
id2b LOC108257525 other downstream 259573 10743639 ~ 10746759 (-)
G293480 NA other downstream 324642 10681310 ~ 10681690 (-)
LOC113531858 scg5,LOC107756590,LOC107601900,LOC107721307,LOC107549096 other downstream 468226 10531994 ~ 10538106 (-)
lrfn2b LOC108257564,LOC106582474 other downstream 1137691 9750991 ~ 9868641 (-)
saysd1 saysd1 other upstream 1055837 12068969 ~ 12075508 (-)
LOC113532050 LOC108257549 other upstream 1082286 12095418 ~ 12219424 (-)
G294369 NA other upstream 1227857 12240989 ~ 12241901 (-)
LOC113531840 ccr6 other upstream 1229447 12242579 ~ 12246178 (-)
rd3 rd3,LOC107695969,LOC107562313,LOC107712419,LOC107685781 other upstream 1298550 12311682 ~ 12317936 (-)

Expression


Co-expression Network