RNA id: XM_026944615.2


Basic Information

Item Value
RNA id XM_026944615.2
length 1385
RNA type mRNA
GC content 0.46
exon number 11
gene id snapc1a
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 7539918 ~ 7546180 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAGGCTCCTCCCACCAGCTCGAGCTTCCGAACGTGTTTGAGCAGGTGAGCCTAATTAACGCCGAGGCTCCGCCCACCTGTCAGTTCTCGGTCCGGATGGCGGCGGcCACAAAAACGTGTGATGTCCACTGGATTCCGTTTAAAAGCGACTGTGAGGAGCTGCTGGGACGCTTCCAGCAGACGGAGTCGGTGCGATATGAAGCGTTTGCGGCCATATGGAGAGTTATGGACTTCTCCAGTGTGTTTTATGGAATGACCACAAACTACGAGAAAAGACCCTTCAGCCGTCTCGTCTTTACCACAGTGTATGATTACTTCTTGCCCCCATACAGCTTTCAGATCCGAGTGGGGGCACTGTACATGTTCTACGGCCTTTACTTCTCACAGCCTACCTGGCCAAAGGAAAAGATCTGGATTGCACTGAAGGACTGGATGTGTATACAGAAGTTTGTCTCAGATGCTATCAGCTGTCAGCATCTGGATGTTGTATATGTCTACAGGAAGCTTGTTTTTgataaggcttttttttatacCGCCATGCCCAACCAGCTCACATTTGATGCAAAGCGCCGTTTTAAAAACAGGAGAATCAATGAGTTGTTCCAGGACCAGCGAGCCAGAGTGACAGAGCTGGTTAATCCAGGTACACTGGAGGAAATTACAAATGTGCAGGCTCATTATGAGCGGATTAAGCAGGCTCTGCATGTGTCCGCCACAGTCAGTGTGACACCAGTCAACCTAAGTGTGCAACTTGAGGAATGTGCACGTGCGTTTCACCAGTGGCAGGAAAATAACAAAAGACAGAAGAATAAAAACTCTGGAACAAAAGCAGAGGAGAGCACTCAGCCGTTAGAGtgcCCCAACAGGGCAGATCTACTGGCTACAATAAAGTCAAAGTCTTATGGGCATCTAGCAACGGCTTCCAAATCACGGCgacacagacaggtggagaTGGACACCTCGGGATCTGGCACAGACCATGCGCAAGAGTTTTTGTCTCCGCACAGAAAGAGGCAGCTGTCTCTCAGACAGAGGACCTGGCGAAAGCTGGGCAGAAAAGGGTCAGAAGAACAAAGACAACAACACTGGCTTCTAAGCACAAAGGAGGAAGACAAAGCAGCTTTGAAGAAATGCCAACAGAAGAACAGATTTAAGTGGTGAAATGTGGCACATTGTGGGAGTGGATTTGTTTCTCTCACtcagtaggtttttttttttccattggtTTCTGTTGGCAAATGTAATTCAGGAATACAAACAGAGTGGCTTTCTTGCAGTTTTTCTTAAATTCTTACCTGATTAGATTTTTGGACAGACTGTATTTATGGAACTAAACTTTAATGGTTTATTTGTCAATACgctttgtgtttattaaatagaataaat

Function

GO: NA

KEGG:

id description
ko03460 Fanconi anemia pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004580144.1 lncRNA downstream 277636 7259935 ~ 7262282 (-) True LOC113545333
XR_003404599.2 lncRNA downstream 277782 7259917 ~ 7262136 (-) False LOC113545333
TU344978 lncRNA downstream 520234 7017034 ~ 7019684 (-) True G291198
TU344979 lncRNA downstream 524031 7014734 ~ 7015887 (-) True G291199
TU344956 lncRNA downstream 561389 6978327 ~ 6978529 (-) True G291182
TU345470 lncRNA upstream 130358 7676537 ~ 7767766 (-) False G291593
TU345473 lncRNA upstream 220443 7766622 ~ 7767766 (-) True G291593
TU345525 lncRNA upstream 221663 7767842 ~ 7768116 (-) True G291629
TU345529 lncRNA upstream 223090 7769269 ~ 7769478 (-) True G291633
TU345751 lncRNA upstream 577466 8123645 ~ 8125793 (-) True G291813
XM_026944477.2 mRNA downstream 2247 7522861 ~ 7537671 (-) True si:ch211-212g7.6
XM_034313804.1 mRNA downstream 19077 7503849 ~ 7520841 (-) True ppp2r5ea
XM_034313622.1 mRNA downstream 62712 7388659 ~ 7477206 (-) False kcnh5a
XM_034313623.1 mRNA downstream 62712 7398060 ~ 7477206 (-) False kcnh5a
XM_026944419.2 mRNA downstream 62712 7404347 ~ 7477206 (-) True kcnh5a
XM_026944348.2 mRNA upstream 919 7547098 ~ 7564044 (-) True hif1ab
XM_026944350.2 mRNA upstream 919 7547098 ~ 7554930 (-) False hif1ab
XM_026944602.2 mRNA upstream 22849 7569028 ~ 7597789 (-) True prkchb
XM_026944598.2 mRNA upstream 118955 7665134 ~ 7667786 (-) True six6b
XM_026944482.2 mRNA upstream 143024 7689203 ~ 7712877 (-) False ppm1ab
XR_004580140.1 other downstream 19077 7505961 ~ 7520841 (-) False ppp2r5ea
TU344922 other downstream 601442 6937468 ~ 6938476 (-) False xkr6b
trnas-uga_10 other downstream 748160 6791677 ~ 6791758 (-) True trnas-uga_10
XR_004580148.1 other downstream 1557755 5965225 ~ 5982163 (-) False igfbp3
TU344413 other downstream 1706540 5829107 ~ 5833378 (-) False si:dkeyp-51f12.3
XR_004580143.1 other upstream 118955 7665134 ~ 7667786 (-) False six6b
XR_004580142.1 other upstream 118955 7665134 ~ 7667786 (-) False six6b
TU346069 other upstream 1038038 8584217 ~ 8598143 (-) False fkbp1b
trnae-cuc_39 other upstream 1654861 9201040 ~ 9201111 (-) True trnae-cuc_39
TU346830 other upstream 1942039 9488218 ~ 9491222 (-) True LOC113545281

Expression Profile