RNA id: XM_034313622.1


Basic Information

Item Value
RNA id XM_034313622.1
length 2410
RNA type mRNA
GC content 0.51
exon number 12
gene id kcnh5a
representative False

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 7388659 ~ 7477206 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCAGGGCGCAGCGTTACCATGGTCTTCTCCATCCCGCCGACACATCCCCGGCCGGTCCGTTTCACTTCCGCGATCAGCTTCGACAGAGTGTACGAGCGTGAGGGACCTCGTAGCTGGAGCGCAGAATGCACGGGGGAAGGAGAGGACTGGTGGCGCCGCAGAACACTTTTTTGGAAAACATCGTCCGACGCTCAAGCGAGACCAGTTTTCTCTTGGGTAATGCACAGATCGTTGAGTGGCCTATAGTGTACAGTAATGACGGATTCTGCAAGCTGTCTGGCTACCACAGGGCTGAGGTCATGCAGAAGAGCAGTACTTGCAGTTTTATGTATGGTGAACTGACAGACAAGAAGACAATAGACAAAGTCAGACAGACTTTTGACAACTATGAGTCCAATTGCTTTGAAGTTCTGCTCTATAAGAAGAACAGGAGCCCAGTATGGCTATACATGCAGGTGGCCCCGATCAGGAATGAAAACGATAAAGTGGTTCTGTTCCTCTGCACCTTCAAGGACATAACCGTCTTCAAACAACCCATCGAGGACGAGACCACCAAAGGATGGACCAAATTTGCAAGACTGACCAGAGCGCTGACCAATAGCCGTGGCACACTCCAGCAACTTGCACCGTTAAACAAAACTGAAGTGAGCCACAAGCACTCACGACTGGCTGAGGCTCTTCAGTTAGGCTCAGACATCCTCCCGCAATACAAACAGGAAGCTCCTAAAACTCCTCCTCATATCATCCTGCACTACTGCACCTTCAAGACCACCTGGGACTGGGTCATTCTCATCCTCACCTTCTATACTGCCATCATGGTGCCCTATAACGTCTCCTTCAAGACCAAGCAGAACAACCTCGCCTGGCTGGTGGTGGACAGTGTGGTGGATGTCATCTTCCTGGTGGACATTGTGCTTAATTTTCACACCACATTTGTGGGGCCTGGTGGAGAGGTCATATCAGATCCTAAACTCATACGCATGAACTACCTGAAAACGTGGTTTGTCATAGACCTGCTCTCCTGCCTGCCATATGACATCATCAACGCGTTTGAGAATGTGGATGAGGACTCCATCTCTGACTCCTCTGCAGTGGGCCACATACCGGCAGCGCGGAACAGCACGCGCACCGAGGACTCCGTGCTGCCGGGTCTCAGCAGCCTTTTCAGCTCACTTAAAGTGGTGCGTCTGCTGCGTCTGGGCCGTGTAGCTCGTAAATTGGACCACTATCTGGAGTATGGCGCTGCTGTTCTGGTTCTCCTTGTTTGCGTCTTTGGCTTGGTGGCTCATTGGTTGGCCTGTATCTGGTACAGCATCGGCGATTACGAGGTCATTGATGAAGTCACCAACACCATTAAGACAGACAGCTGGCTCTATCAGCTAGCAATCAGTATCGGCACACCTTACCGGTACAATGCCAGCGGATCAGGCCAGTGGGAGGGAGGACCCAGTAAGGACACCCTCTACATATCATCACTCTACTTCACAATGACCAGCCTGACTACCATTGGCTTTGGTAACATCGCTCCTACCACGGATGGCGAGAAAATCTTCTCTGTGGCCATGATGATGGTGGGCTCTCTCCTGTATGCCACCATCTTTGGAAACGTGACCACCATCTTCCAGCAGATGTATACTAATACAAACCGCTACCACGAGATGCTGAACAATGTACGGGACTTTCTGAAGCTCTATCAGGTGCCAAAAGGCCTGAGCGAAAGAGTAATGGACTACATTGTCTCCACCTGGGCCATGTCAAAAGGCATTGACACAGAGAAGGTGCTGTCCATCTGCCCCAAAGACATGCGGGCAGACATTTGCGTACACCTGAACCGGCAGGTGTTTAATGAGCATCCTGCCTTCCGGCTGGCAAGTGACGGCTGTCTGCGCTCTTTGGCTGTGGAGTTCCAGACCACACACTGCGCACCGGGTGACCTCATCTTCCATGCTGGAGAGAGTGTTGACACACTATGCTTTGTAGTGTCCGGCTCACTTGAGGTCATTCAGGATGATGAGGTTATTGCCATTCTAGGTAAGGGTGATGTgtttggtgatgttttctggAAAGAGACCACGCTTGCTCATGCATGTGCCAACGTGCGTGCACTGACTTACTGTGACCTCCATGTGATCAAGAGAGAGGCACTGCTCAAGGTGCTGGAATTCTACACAGCTTTTGCCAACTCTTTCTCACGTAACCTCATCCTCACCTGCAACCTCCGGAAGCGGAGTGATGCGACTGGACAGCCTTGGgaaaaacatcattttcatttcGGCGAAGAGTAACCTGGAATACAAGTCATGATAATATCACCACAATATCATGACACAGGGGGTGTGTGGATCGTGACTTACAGTACAGCCCATGGCAGCAAGTTTGGAGATTTACATCAAGTTCTGCACGTCCTCAA

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0042391 regulation of membrane potential biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0000160 phosphorelay signal transduction system biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0000155 phosphorelay sensor kinase activity molecular_function
GO:0005249 voltage-gated potassium channel activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004580144.1 lncRNA downstream 126377 7259935 ~ 7262282 (-) True LOC113545333
XR_003404599.2 lncRNA downstream 126523 7259917 ~ 7262136 (-) False LOC113545333
TU344978 lncRNA downstream 368975 7017034 ~ 7019684 (-) True G291198
TU344979 lncRNA downstream 372772 7014734 ~ 7015887 (-) True G291199
TU344956 lncRNA downstream 410130 6978327 ~ 6978529 (-) True G291182
TU345470 lncRNA upstream 199331 7676537 ~ 7767766 (-) False G291593
TU345473 lncRNA upstream 289416 7766622 ~ 7767766 (-) True G291593
TU345525 lncRNA upstream 290636 7767842 ~ 7768116 (-) True G291629
TU345529 lncRNA upstream 292063 7769269 ~ 7769478 (-) True G291633
TU345751 lncRNA upstream 646439 8123645 ~ 8125793 (-) True G291813
XM_034313626.1 mRNA downstream 4558 7358921 ~ 7384101 (-) False ptk2bb
XM_034313625.1 mRNA downstream 4559 7358921 ~ 7384100 (-) False ptk2bb
XM_034313624.1 mRNA downstream 4560 7358921 ~ 7384099 (-) True ptk2bb
XM_026944422.2 mRNA downstream 4561 7358921 ~ 7384098 (-) False ptk2bb
XM_026944421.2 mRNA downstream 4561 7358921 ~ 7384098 (-) False ptk2bb
XM_034313804.1 mRNA upstream 26643 7503849 ~ 7520841 (-) True ppp2r5ea
XM_026944477.2 mRNA upstream 45655 7522861 ~ 7537671 (-) True si:ch211-212g7.6
XM_026944615.2 mRNA upstream 62712 7539918 ~ 7546179 (-) True snapc1a
XM_034313518.1 mRNA upstream 63396 7540602 ~ 7546180 (-) False snapc1a
XM_026944348.2 mRNA upstream 69892 7547098 ~ 7564044 (-) True hif1ab
TU344922 other downstream 450183 6937468 ~ 6938476 (-) False xkr6b
trnas-uga_10 other downstream 596901 6791677 ~ 6791758 (-) True trnas-uga_10
XR_004580148.1 other downstream 1406496 5965225 ~ 5982163 (-) False igfbp3
TU344412 other downstream 1553351 5829107 ~ 5835308 (-) False si:dkeyp-51f12.3
XR_004580140.1 other upstream 28755 7505961 ~ 7520841 (-) False ppp2r5ea
XR_004580143.1 other upstream 187928 7665134 ~ 7667786 (-) False six6b
XR_004580142.1 other upstream 187928 7665134 ~ 7667786 (-) False six6b
TU346069 other upstream 1107011 8584217 ~ 8598143 (-) False fkbp1b
trnae-cuc_39 other upstream 1723834 9201040 ~ 9201111 (-) True trnae-cuc_39

Expression Profile