RNA id: XM_034313626.1


Basic Information

Item Value
RNA id XM_034313626.1
length 4270
RNA type mRNA
GC content 0.44
exon number 32
gene id ptk2bb
representative False

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 7358921 ~ 7384101 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AACTTTTCTGGTGTCTTTGGAGAAGAAACTGTCGAGACAAGAGGCCAAAATTCTGAAGGAACAGTTGGAGCAAGTTGCAGATGAGAAGTAGGAAGTACGAAGGGCAAGTCAGGCTGAGGCGTGGCCTTCGAGTCACTTCACCTCCATCTACCTGAACACGGAGAGAGTGGCACCACTGAGAGAGACTCTTCTAATGACATGAACGGGACACAGGACACTGTACAAGGCCtgatgtgggtgtgatggtgtgcTTTTTGCCGTAAGAAGTTTTCAAAATGGCAGGTGATACCAGCACACTGTCTTGGAAGGTGGCAAGTCCAGGCTTTGATGGGCCAAAAACCCCTGTGTTTGCACTTGCTGGAGAGGGAGGTCCTGTGAAAATACTTAAAGTATGcttcagcagcagcaacaaccaGAAAAACTTCAAACTTGTCAAGTGTGATAGCTCCTGGCAGATAAGGGCCATCATTAAGTCCATCCTGATCAGTGGGCGTTTGGGCCCTAATGTGCAGAATGCAGGTTGCTTTGGCCTGAGACTCAAACACCTGAAGTCTGAGGAGCATCACTGGCTGCATCCTGATTTGACTGTAGGTGAGGTGGAGCAGTGCTATGAAAAACTCCATGTGGAGGCAGAGTGGAGATATGACCTGAGGATTCGCTACATACCAGCTAATTTCTTGGAAAAGTTTAAAGATGACAGAACTTCGTTGTTATATCTCTATCATCAGGTTCGCAGTGACTACATGCAGCAGTATTCTAGTAGAGTCAGTGATGGCATGGCATTGCAGTTGGGTTGTCTGGAGATCAGGAGGTTTTACAAAGACATGAATGCCAAAGGCCTTGAGAAGAAGTCCAATTTTGAATTGTTAGAGAAAGAAGTTGGACtagaccttttttttccacagaaactGATCGACAGTATGAAGCCGAAGCAGCTCAGGAAGATGATCCAGCAGACGTTTCAGCAATATGGCACACTCAAAGAGGAAGAGTGCATGGTCAAGTTCTTTAAGACCTTTGGTGAATTCATTAACTTTAATGAAGAGGTTTTCCCGTGTGAATTAGTGCAAAGCTGGAGTCTAACAGTGGATTTAGTTATTGGAGCAAGAGGTATTCGCCAACGAGCACAAGCAGATTTATCGacagtaTGTCTAGCAGAATTTAAACAGATCCGAAGTATTAAGTGCACTGCACAAAGTGACGGCAAAACTCTGTTAGACATTGACATCAAGGGAGCCAAACAGGCTCTCTCAGTCAATGTGCCTACATTAGCGATGGCAGAGAACATGGCTGACCTGATTGATGGCTACTGCAGGCTTGAGAACAACACAGACTCATCATTGATATCTCGGCCTAATAAAAGTACAGAGGTACAGCTCCGTAACTCTCTTCCTGCAATCCCCTCAGATAAAGTGTTACCTGAGCACTTGAAAGAGACTGAATGGCACAGTAGGAATTCTGATATATACTGTGAAATTTTGGACGAAAAACCTCCACCTCCTGtAGTGAAATATGGAATCTCTAGGAAGTCCATTGTCTTGGGATCTATTTTGGGCGCAGGTTTTTTTGGAGAGGTCTATGAAGGAGTTTACAAAAAAGAGAACGGTGAGAAGATCAAAGTGGCTGTAAAGACCTGCAAAGAGTGTGCACCTGATATCATGGATAAATTCATGAGTGAAGCAGCTATTATGAAAACGCTGGACCACCCTCATATAGTGAGTCTGATAGGTATCATAGAGGAAGAACCTGTATGGATCGTCATGGAACTCTACCAGTATGGTGAGctTGGGGACTACTTGACCAAAAACCAGAACACTTTGACCAATGTCACACTAGTCCTGTTTAGCCTGCAGGTTTGCAAAGCTCTGGTGTACTTACAGGGAAAGAACATGGTACACAGAGACATCGCCGTGAGAAATGTGCTTGTCGCCACACCAGATTGTGTGAAGCTTGGTGACTTTGGCCTGTCCAGATACATAGAGAATGAGGAATATTACAAAGCCTCTGTTACCCGATTGCCAATCAAATGGATGGCCCCTGAGTCCATAAACTTTCGTCGGTTCACCACAGCCAGTGATGTGTGGATGTTTGCTGTCTGCATGTGGGAGATACTGAGTCGGGGGCAGCAGCCTTTCTTCTGGCTGGAGAACCGTGAAGTGATTAACCAGCTGGAGATGGGCATCAGGCTGCCTAAGCCAGAGCTGTGCCCTCCTGCCCTGTACTCACTCATGACCCGCTGCTGGAGCTACGACCCCAACGAGAGGCCCAGCTTCACTGAACTTGTCTGCAAAATCAATGATGTGCACAAAATGGAGAAGGACCTGGaagcagagaaggagagagacagacagagagccacCAGGTTTCTAGAGACCAAGTTCAACATTAGTGAACCGCCTCCAAAGCTATCTATTTCTGTGTGCATGCAGCCCTCAAGACTGAACCCTGGTCGTTTTGGGAATACCCTTGGCATCGGTCTGCACATTCAGCTAAATGAGGCATTGTGTGCCAGTTCTCCAGATCTGGTTAGTCCATGTGACTATCAGTCTCCTGTAGACTCCACCAACAACCTCATGGTTCCCAGCATGCCTGCCCGGCGCCTCAGTCTGGGAGAGGGGGAGTTCAGTGTAGGGCCATCCAGCAAGGAGGATGCGCAGCGCCTGTGGCAGTTAGAAAAGGAGCGGCTGCAGGATACCATAAAGAAACAGAAGGATGAGATGGTGGAGGACAAACAGTGGCTTGAGAAAGAGGAGAAGCTTCTGGACCCCAAAATAAATGAGAGCACAGTTGTTGAGGAAACAGACCCTCAGCCTAATAATGATGAACTTCAAAACCCTCCTGAAAAGCCCCCAAGAATTTCCCTGCAGCCTGCCCCTACAGCAGAACTAGATCGCTCTGAGGACAAGGTGTACCAGTGTGTCATGGATCTGGTTAAAGTGGTAGTGCAGCTGAAAAATGATGTGAATACACTACCATCCACTGAGTACATATCCTTAGTCAAGTCTGTTGGAATGACTTTGAGGGATTTAATTTCCAGTGTTGATGACGTTCTTCCATCTTTACAAGGAGCTATAAGGACGGAGATTGAGGGCACACAGAAGCTGCTGAATAAGGACATGGCGGAGCTGATCAATAAGATGCGGCTGGCCCAACAAAACGCCATCACCTCTCTGAAGGAAGAATGCAAGAAGCAGATGCTGGCAGCAGCTCACACGCTGGCCATGGATGCCAAGAACTTGCTGGATGCAGTGGACCAGGCGCGGGTACGCGCCAACCTGGCCAAGCCCAAAACTGAGGATGCAGTCTTCTCAGACAcagactagagagagagagagagagagagagagagagaggaagagcttGATTCAATTTGTACTTACAAAAAAACTGATATACTATTTTCTGTGGTGTCAAAAAAGGTACTGTACTTGTACATGTTTAATCTCAAAGGTACAAACAATGTCAATGTACCCTAACAGGTACAACAGAGTCTTTAAGTCTGACAGACAGTCTTTAAGTTCTGATTATGTACCTTGAATGgattttaaaggtacattacgTTCTCTAGGTACAGAATACATATGCTTGTGATTATAAAGTTTAGTACTCCTTTTCAGCTATAGTTTCCTGAATACAGATTGCGCCTGAAATAACTGACTGATTATAGGTCATCCTATCACTTTAAATCAATTCTAATTTTAGTCAGGAAACTATTGCACCAATGTCTAGCTCCAAGAAATATAATCTTTGTAATAGGTGAGTTAGGTGGCACATTTTAGAGTGGGAACTAAATTTTCTTGGAGAAATTTCAGACTAGATTTTATATATCCTGGAGATCAACCTTGTTTCTCTACAGTGAAGTAATATATTCGTTCCATCTTCCTGTATTGAGCTGCCAGGTGCTGATACAATCAAATATGTACCTTTAAATGCAGTCTTAGTGTGTTGCTGTATAATTTGATGATTAGCACTACTACTATTggtgtaaaacatttaaagacatACAGTGGTCATGACATTTCTTCACTGATTGCAGAAATATGTACCCAAATAATGTATATACAGCAAAAGAAAGTTTCTACATTCATATTCTTTCTCAACTCTGTATGGTTCAAGGATATGTGACAGACATATATTTAGAAGCAAGAATTCAAATTATATCAGGTTTCATAAGTGATATCTCAGTGTTGTATTCTCGAGTCTATGTACATTTTCGCAACAAACTGTGAGCTAATAAAAATGCCACTGAAATATATGGTCTCAAAATGAA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0007172 signal complex assembly biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005925 focal adhesion cellular_component
GO:0005524 ATP binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004580144.1 lncRNA downstream 96639 7259935 ~ 7262282 (-) True LOC113545333
XR_003404599.2 lncRNA downstream 96785 7259917 ~ 7262136 (-) False LOC113545333
TU344978 lncRNA downstream 339237 7017034 ~ 7019684 (-) True G291198
TU344979 lncRNA downstream 343034 7014734 ~ 7015887 (-) True G291199
TU344956 lncRNA downstream 380392 6978327 ~ 6978529 (-) True G291182
TU345470 lncRNA upstream 292436 7676537 ~ 7767766 (-) False G291593
TU345473 lncRNA upstream 382521 7766622 ~ 7767766 (-) True G291593
TU345525 lncRNA upstream 383741 7767842 ~ 7768116 (-) True G291629
TU345529 lncRNA upstream 385168 7769269 ~ 7769478 (-) True G291633
TU345751 lncRNA upstream 739544 8123645 ~ 8125793 (-) True G291813
XM_034313433.1 mRNA downstream 78312 7276239 ~ 7280609 (-) True baalcb
XM_026944332.2 mRNA downstream 102071 7250007 ~ 7256850 (-) True eif2b4
XM_034313803.1 mRNA downstream 113429 7220305 ~ 7245492 (-) True snx17
XM_026944334.2 mRNA downstream 113436 7220305 ~ 7245485 (-) False snx17
XM_026944324.2 mRNA downstream 150879 7187928 ~ 7208042 (-) False si:ch211-278j3.3
XM_034313622.1 mRNA upstream 4558 7388659 ~ 7477206 (-) False kcnh5a
XM_034313623.1 mRNA upstream 13959 7398060 ~ 7477206 (-) False kcnh5a
XM_026944419.2 mRNA upstream 20246 7404347 ~ 7477206 (-) True kcnh5a
XM_034313804.1 mRNA upstream 119748 7503849 ~ 7520841 (-) True ppp2r5ea
XM_026944477.2 mRNA upstream 138760 7522861 ~ 7537671 (-) True si:ch211-212g7.6
TU344922 other downstream 420445 6937468 ~ 6938476 (-) False xkr6b
trnas-uga_10 other downstream 567163 6791677 ~ 6791758 (-) True trnas-uga_10
XR_004580148.1 other downstream 1376758 5965225 ~ 5982163 (-) False igfbp3
TU344412 other downstream 1523613 5829107 ~ 5835308 (-) False si:dkeyp-51f12.3
XR_004580140.1 other upstream 121860 7505961 ~ 7520841 (-) False ppp2r5ea
XR_004580143.1 other upstream 281033 7665134 ~ 7667786 (-) False six6b
XR_004580142.1 other upstream 281033 7665134 ~ 7667786 (-) False six6b
TU346069 other upstream 1200116 8584217 ~ 8598143 (-) False fkbp1b
trnae-cuc_39 other upstream 1816939 9201040 ~ 9201111 (-) True trnae-cuc_39

Expression Profile