ckbb (ckb,LOC108257851,LOC108434982,LOC102782142,LOC100699354,LOC102312842,LOC107560383)


Basic Information

Item Value
gene id ckbb
gene name ckb,LOC108257851,LOC108434982,LOC102782142,LOC100699354,LOC102312842,LOC107560383
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 7833328 ~ 7837002 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026944677.2
gccaatcagagcaaaGCTCCGGCGCCGTATAAAAACAGGCAAAGCCGCTTATTTCTGGAGACCATAATCAGCGTCGGTGTGCTTGTTTGTGGACTAAAGGAAGCGTTGTTTTCATTTTCCCCCAAAGAAAGTAGACTAAAAGCGCAGAGCAGCCATGCCTTTCGGCAACACCCACAACAAGATGAAGATGAACTACACGGCCGAGCAGGAGTACCCCGACCTCAGCCAGCACAACAACCACATGGCCAAGGTGCTTACCCCGGAGATGTACGCAAACCTGCGGGACAAGGAAACCTCCAGCGGCTTCACACTGGACGACGTCATCCAAACCGGGGTTGATAACCCAGGCCATCCATTCATCATGACTGTGGGCTGTGTTGCTGGTGATGAGGAGACATATGAGGTGTTTAAAGATCTTCTGGACCCAGTCATCGAAGACCGCCATGGAGGCTACAAGCCCACAGACAAGCACAAGACCGACCTGAACCCAGACAACCTTCAGGGTGGAGATGACCTTGATCCCAACTATGTGTTGAGCTCCAGAGTAAGAACTGGCAGGAGCATTCGTGGCTTCTCCCTGCCCCCTCACTGCAGCCGTGGTGAGAGGCGTGCCATTGAAAATCTGGCTGTTGAAGGTTTGAGTAGTCTCGACGGtgaatttaaaggaaaatacTATGCCCTGAAGAACATGAcagaggaggagcagcagcagctgattgatgatcacttcctgtttgacaAGCCAGTGTCCCCACTGCTGTTGGCCTCTGGGATGGCTCGTGATTGGCCCGATGCCAGGGGGATCTGGCACAATGATGACAAGACCTTCCTGGTCTGGGTGAATGAAGAAGACCACCTCCGTGTCATCTCCATGCAGAAGGGTGGCAACATGAAGGAAGTCTTTACTCGTTTCTGCACAGGGCTCACAAAGATTGAATCTCTCTTCAAAGAGAAGGACCATGAATTCATGTGGAGTGAGCACCTGGGCTACATACTCACCTGCCCTTCTAACCTGGGGACAGGGCTGCGTGGTGGTGTCCACGTTAAGCTTCCAAACCTGAGCAAACATGAGAAGTTTGGCGAGATCCTCAAGAAGCTGAGGCTTCAGAAACGTGGAACAGGTGGAGTAGACACTGCTGCAGTGGGTGGCATCTTTGACATCTCCAATGCTGACCGGCTGGGCTTCTCTGAGGTGGAGCTGGTACAGATGGTTGTAGATGGTGTCAAGCTTCTCATCGAAATGGAGAAGTGTCTGGAAGCTGGCCAGTCAATCGATGACCTGATGCCTGAGCAGAAGTGAACACTGCTTTATGACCCAATCATAATCCCAAATTGACTCCTCCTCCTGCCTTCAGCAGCTCTCCTTTCCTCCAAACCAGTAATGTTAATCACATCAAGGAGCTCACTCTGCCCATGTTAGTGACACTAAAAGTTAGACGAGTCTTCCATCAGTCCGAAGGATTTTGTACCTCCAGCGTCTTGAGGATGGCTCTTTAACACCTGAAATAAAGTCTCTTTGGCCCATGGAA

Function

symbol description
ckb Enables ubiquitin protein ligase binding activity. Involved in substantia nigra development. Located in cytosol.

NR:

description
PREDICTED: creatine kinase B-type

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004111 creatine kinase activity molecular_function

KEGG:

id description
K00933 E2.7.3.2; creatine kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026944677.2 True 1529 mRNA 0.51 8 7833328 7837002

Neighbor

gene id symbol gene type direction distance location
ppm1ab ppm1a,LOC108258036,LOC108434987 coding downstream 120451 7689203 ~ 7712877 (-)
prkchb LOC108258108,LOC108434990 coding downstream 235539 7569028 ~ 7597789 (-)
hif1ab hif1a,LOC100305068 coding downstream 269284 7547098 ~ 7564044 (-)
snapc1a NA coding downstream 287148 7539918 ~ 7546180 (-)
si:ch211-212g7.6 LOC108257884 coding downstream 295657 7522861 ~ 7537671 (-)
xrcc3 xrcc3 coding upstream 41645 7878647 ~ 7885540 (-)
btbd6b btbd6,btbd6b,LOC107755235,LOC106571711,LOC107718408 coding upstream 66041 7903043 ~ 7906891 (-)
daam1b daam1b,LOC108257948,LOC108412077 coding upstream 464495 8301497 ~ 8349652 (-)
mark3b LOC108258043,LOC108412004 coding upstream 548633 8385635 ~ 8440705 (-)
runx2b runx2b,runx2,LOC108258149,LOC107726745,LOC107678859,LOC103028241,LOC107697170,LOC108410521,LOC102312376 coding upstream 633886 8470888 ~ 8500696 (-)
G291633 NA non-coding downstream 63850 7769269 ~ 7769478 (-)
G291629 NA non-coding downstream 65212 7767842 ~ 7768116 (-)
G291593 NA non-coding downstream 65562 7676537 ~ 7767766 (-)
LOC113545333 NA non-coding downstream 571046 7259917 ~ 7262282 (-)
G291198 NA non-coding downstream 813644 7017034 ~ 7019684 (-)
G291813 jag2 non-coding upstream 286643 8123645 ~ 8125793 (-)
G291951 NA non-coding upstream 460128 8297130 ~ 8297344 (-)
G291949 l3hypdh,LOC107684001 non-coding upstream 461132 8298134 ~ 8298613 (-)
G291969 NA non-coding upstream 583414 8420416 ~ 8425470 (-)
G292009 NA non-coding upstream 629807 8466809 ~ 8467017 (-)
six6b six6b,LOC108257662,LOC107743981,LOC107589092,LOC103035477,LOC107697293,LOC107701490,LOC108434975 other downstream 165542 7665134 ~ 7667786 (-)
ppp2r5ea ppp2r5ea,LOC108434994,LOC103032801,LOC108257929,LOC107697307,LOC107701493,LOC107563687,LOC107707079,LOC107743972 other downstream 312487 7503849 ~ 7520841 (-)
xkr6b xkr6b,LOC108258067,LOC107684793,LOC108435015,LOC107723320,LOC107589046,LOC107746102,LOC107701509,LOC103023855 other downstream 850519 6936128 ~ 6982809 (-)
igfbp3 LOC100305016,LOC108416115 other downstream 1851165 5962339 ~ 5982163 (-)
si:dkeyp-51f12.3 NA other downstream 1997846 5829107 ~ 5835482 (-)
LOC113545183 LOC108258142,LOC108257835 other upstream 349741 8186743 ~ 8294574 (-)
fkbp1b fkbp1b other upstream 747191 8584193 ~ 8598167 (-)
LOC113545281 samd15 other upstream 1651216 9488218 ~ 9491270 (-)
znf410 LOC108258012,LOC108411620,LOC103043020,LOC103375802,LOC107659809 other upstream 1671579 9508581 ~ 9516177 (-)
lrfn2b LOC108257564,LOC106582474 other upstream 1913989 9750991 ~ 9868641 (-)

Expression


Co-expression Network