RNA id: XM_026923699.2


Basic Information

Item Value
RNA id XM_026923699.2
length 1674
RNA type mRNA
GC content 0.44
exon number 6
gene id LOC113532350
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 10225451 ~ 10227811 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCAACTGTGGAAATAGTCCATATGAGACTGCTGTTTCAAATAAATAGGAGTGTGAAGTGAGATCTGCATCAAAGGTGATCAACAGCCATCATGAAATCTCTGGTCCTGCTTTTGTTTGTGGGAGCTTGTGCTCTGGAGGATAACAAGATTGTTGGAGGGTATGAGTGCACACCCTACTCCCAGCCCTGGCAAGTGTCTCTGAATGCTGGCTATCACTTCTGTGGTGGTTCTCTGATCAATCAGAACTGGGTTGTGTCTGCTGCTCACTGCTACAAATCTCGTTTGGAGGTTCGTTTGGGAGAGCACAACATCCAGATTAATGAGGGTACTGAGCAGTTCATCTCCTCGTCTCGTGTCATCCGCCATCCCAACTATGACTCCTGGACCTTAGACAGCAACATCATGCTCATCAAGCTAAGTCAACCTGCTACTCTGAACAACTATGTGCAGCCTGTTGCACTGCCTAGGAGCTTCCCCCCTGCAGGAACCTGGTGCACAGTCTCTGGTTGGGGAAACACCATGAGCTCCACTGCCGATCGCAATAAGCTGCAGTGTCTTGAGGTCCTTATTCTCTCTGACAGGGATTGTAATTGCTACCTTGGTATCATCACTAATACCATGTTCTGTGCTGGTTTCCCGGAAGGAGGCAGGGACTGCCGGGGTGACTCTGGTGGCTCTCTGGTGTGCAATGGTGAGCTGCAGGGTATTGTGTCTTGGGACAGCAGCTGTGCTGAGAATTGCCTTGGTTTCTATGTCAAGGTTTATGTTTTCACCAGCTGGATTTCTCAAACAATGGCCAGCAACTAAATCTGCTCCAGCCCCCTTTATATAATGCAACAACATATTGTGAATTCCAACACCAACATATTCATAAAACTTCTTGAAGGAATAGGAACAATCCTGGTTGACTTTATATCTAGCTTGATTctcttatataaatatttattaccaTACACCTGTACTTATGGGTACCTGGAGGACTAGTAGTTGGGCCTTAGCACTCTCACCGCTGTGGTCCGGGTTCAACTCCCGGGCAGGGAACCACACGACAGTGTACTCCTAGTCCCcatcccaagcccagataaaattggagAGGGTTGTGTCAAATATATAAGcaaacatgcggaccaatgatccgctgttgCAACCCTTAATGGGAGCAGCCAGAAGAATAACAACAACTATAATACTGTACtgcaaggaaaactccaccctgaaacaaattaaatatgtttatataggAAATATTTGTGAGGTACTAAGTGACTGTGGTGCCACTTTGTTGGCTGGAGTTGTATATTCATTACTGTCATGAAAAGTTAGCAGTTGTCTGCCACAGGGTGACACTGGGCCTCATCTATCAAtgtagtaaagttgtgtgtaaatatttgcataagccaaaccgAAAACCTTCGagtggatttacaaaagttttggaaacagtgattttctttgtacttgcGTAAGTATGTTGAAGACAATACCCTGTAAATTACTGGGCATgtgcacagcacagctgatttgcatttggtgaacCGACAAAACTTCATTAAAGGCAAAGTTCATTGCGCTGAAATAACAAGTAGATGGCAAAAAAGACTTTCTTAGAGGTAGAGAGTTATTTAGACTTGCATCTAtgggaataaaatataaagtcatgggaaaaagaaagta

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004580145.1 lncRNA downstream 29170 10187821 ~ 10196281 (-) True LOC117599775
XR_004580106.1 lncRNA downstream 44762 10179966 ~ 10180689 (-) True LOC117599728
TU347239 lncRNA downstream 197448 10027305 ~ 10028003 (-) True G293082
TU347211 lncRNA downstream 199602 9977852 ~ 10025849 (-) True G293057
TU347474 lncRNA upstream 18271 10246082 ~ 10246502 (-) True G293276
TU347497 lncRNA upstream 87847 10315658 ~ 10315869 (-) True G293296
TU347518 lncRNA upstream 130686 10358497 ~ 10359101 (-) True G293315
TU347519 lncRNA upstream 131412 10359223 ~ 10359468 (-) True G293316
XR_004580139.1 lncRNA upstream 135194 10363005 ~ 10374556 (-) True LOC117599772
XM_026923698.1 mRNA downstream 5867 10217742 ~ 10219584 (-) True LOC113532348
XM_026923697.2 mRNA downstream 17837 10206021 ~ 10207614 (-) True LOC113532347
XM_026944663.2 mRNA downstream 90125 10132583 ~ 10135326 (-) False stx11b.1
XM_026944662.2 mRNA downstream 90126 10132583 ~ 10135325 (-) True stx11b.1
XM_026944661.2 mRNA downstream 96367 10124288 ~ 10129084 (-) True irf4b
XM_026922831.2 mRNA upstream 29685 10257496 ~ 10267700 (-) True thbs1b
XM_034313749.1 mRNA upstream 153108 10380919 ~ 10395762 (-) True chrm5b
XM_034313750.1 mRNA upstream 153108 10380919 ~ 10383484 (-) False chrm5b
XM_026923085.2 mRNA upstream 184234 10412045 ~ 10495693 (-) True ryr3
XM_026923388.2 mRNA upstream 300018 10527829 ~ 10530453 (-) True grem1a
XR_003404605.1 other downstream 381979 9843369 ~ 9843472 (-) True LOC113545371
TU347081 other downstream 464788 9754499 ~ 9760663 (-) False lrfn2b
XR_004580169.1 other downstream 709274 9508703 ~ 9516177 (-) False znf410
TU346830 other downstream 734229 9488218 ~ 9491222 (-) True LOC113545281
trnae-cuc_39 other downstream 1024340 9201040 ~ 9201111 (-) True trnae-cuc_39
XR_003403344.1 other upstream 322076 10549887 ~ 10550026 (-) True LOC113532436
TU347714 other upstream 453499 10681310 ~ 10681690 (-) True G293480
XR_004580078.1 other upstream 515828 10743639 ~ 10746759 (-) True id2b
XR_003403339.2 other upstream 1841158 12068969 ~ 12075508 (-) False saysd1
TU348649 other upstream 1928697 12156508 ~ 12219294 (-) False LOC113532050

Expression Profile