RNA id: XM_034313750.1


Basic Information

Item Value
RNA id XM_034313750.1
length 1897
RNA type mRNA
GC content 0.43
exon number 2
gene id chrm5b
representative False

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 10380919 ~ 10395762 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CaactaaaataaaagacaaataataacataaaataacgacatttttttttaagctgatcATTAACATCCTCCTCCACAGACTGTACTGAGTTGTGTGAGGTTATCCACTGCTAATTCAACATGAAGTACAAAGAGGACTGTTTATCTGGCATTTGCTCCCAGTAGACCATCTCCGGAAAGATGGATGAACAGCTTCACAACTCCACAGCGAGTGGAAACACATCAGTCGTCCTGTCAGTTCCATATAACCTTTGGGAAGTCATCACTATTGCTACTGTGTCTGCTGTTGCAAGCCTAATCACCATAGTGGGAAATGTTTTGGTGATGCTTTCTTTCAAAGTGAACAGCCAGCTGAAGACAGTGAACAACTACTATTTACTAAGTTTGGCTTTTGCAGACCTCATTATTGGAGTGTTCTCTATGAACCTTTACACTACGTACATTCTGATGGGATATTGGTCTCTGGGAAACTTAGCATGCGATCTCTGGTTAGCTCTGGACTATGTGGCAAGCAATGCTTCAGTAATGAACTTGCTGGTGATCAGCTTTGATAGATATTTCTCCATTACGAGGCCACTTACGTACCGGGCTAAACGAACACCCAAGCGGGCTGGCATTATGATCGGCTTGGCATGGCTTATATCCTTCATCTTATGGGCCCCTCCTATTTTATGCTGGCAGTATTTTGTGGGCGAGAGGACAGTTCCTCCAGACCAGTGCCAAATTCAGTTCTTCTCAGAACCTGTGATTACATTTGGAACAGCCATAGCAGCCTTTTACATTCCTGTCTCCATTATGACCATTTTATACTGCAGAATCTACAAGGAGACCGAGAAGCGTACAAAAGACTTGGCTGAGCTGCAAGGGATCACGTCTGTGGATAGCCACGACaacccaaaaacacaaaaacaacgATCTTGCTTTGCTTTTAGCACTGACCGGAACAGAACACACGGCTCGTGGTCTTCATCGAACCAGAGCAACGTGACTAAGACTACAGCACACTCTGAGGACGTGTGGGTGAAATCAGATCAGGCTGCTGCTCTCAATAGCTATACATCCTCTGAAGATGAGGAGCGCCCTATTTCGGAAGCACCATCTCAAGATTCCTACAAAAACCAGGATGAGCCGATGAACTGTTATGAAGAAAGCCACTATCTTGCTAATTCCACCAAGTACTGCTCACAAAAGAATAAGAAATGCATCTCCTACAAGTTCAAGCCAGTCATGAAGAACATCAGCCCCCAGAAAGCCAACAGTGAACCTGTTACACATCCTTGCCCATCATCACAACAGTTAACTCTTACATCTGCGTCCTCTTCAGCCCAACCTATGGATTCCAGTCTCAAAAGTCAAATCACTAAACGGAAGAGAATGGTTCTCATCAAAGAGAAGAAGGCAGCTCAGACTCTCAGCGCTATTCTCCTGGCCTTTATTCTTACCTGGACTCCATATAATATCATGGTGCTCATCTCCACCTTCTGCTCTGACTGTATTCCTCTGTCCCTCTGGCACCTGGGCTACTGGCTCTGCTACGTCAACAGCACCATAAACCCCATGTGCTACGCCTTATGCAACAAAACCTTCCAGAAAACCTTTCGAATGTTGCTCTCCTGCAAGTGGAAGAAGAACCGAGGAGAGGAGAAACTGCACTGGTGTGGGCAAAACCCACCAATGACCAACAAACTCACACAGCAAGCAGACTGAGTAATCTGTGTGgcaaaaaaatgatatcttagcaaaTAAATATCTTGACTATAATCTAATTTATCTcatatttctcatatttttttctcatatatTTGTAAttgaaatgagcaaaattatctgccaaccaaacaaaacaatttcaagctcgaaattagtaaaaaaagtGTTGATATACACTTTAGCTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004580139.1 lncRNA downstream 6363 10363005 ~ 10374556 (-) True LOC117599772
TU347519 lncRNA downstream 21451 10359223 ~ 10359468 (-) True G293316
TU347518 lncRNA downstream 21818 10358497 ~ 10359101 (-) True G293315
TU347497 lncRNA downstream 65050 10315658 ~ 10315869 (-) True G293296
TU347474 lncRNA downstream 134417 10246082 ~ 10246502 (-) True G293276
TU347585 lncRNA upstream 148510 10531994 ~ 10532232 (-) False LOC113531858
TU347586 lncRNA upstream 154942 10538426 ~ 10538639 (-) True G293374
TU347624 lncRNA upstream 226451 10609935 ~ 10611495 (-) True G293412
TU347750 lncRNA upstream 491039 10874523 ~ 10874747 (-) True G293513
TU347751 lncRNA upstream 491964 10875448 ~ 10875669 (-) True G293514
XM_026922831.2 mRNA downstream 113219 10257496 ~ 10267700 (-) True thbs1b
XM_026923699.2 mRNA downstream 153108 10225451 ~ 10227811 (-) True LOC113532350
XM_026923698.1 mRNA downstream 161335 10217742 ~ 10219584 (-) True LOC113532348
XM_026923697.2 mRNA downstream 173305 10206021 ~ 10207614 (-) True LOC113532347
XM_026944662.2 mRNA downstream 245594 10132583 ~ 10135325 (-) True stx11b.1
XM_026923085.2 mRNA upstream 28561 10412045 ~ 10495693 (-) True ryr3
XM_026923388.2 mRNA upstream 144345 10527829 ~ 10530453 (-) True grem1a
XM_026922791.2 mRNA upstream 148720 10532204 ~ 10538106 (-) True LOC113531858
XM_026922788.2 mRNA upstream 155286 10538770 ~ 10542055 (-) True actc1a
XM_026923771.2 mRNA upstream 163867 10547351 ~ 10551998 (-) True LOC113532384
XR_003404605.1 other downstream 537447 9843369 ~ 9843472 (-) True LOC113545371
TU347081 other downstream 620256 9754499 ~ 9760663 (-) False lrfn2b
XR_004580169.1 other downstream 864742 9508703 ~ 9516177 (-) False znf410
TU346830 other downstream 889697 9488218 ~ 9491222 (-) True LOC113545281
trnae-cuc_39 other downstream 1179808 9201040 ~ 9201111 (-) True trnae-cuc_39
XR_003403344.1 other upstream 166403 10549887 ~ 10550026 (-) True LOC113532436
TU347714 other upstream 297826 10681310 ~ 10681690 (-) True G293480
XR_004580078.1 other upstream 360155 10743639 ~ 10746759 (-) True id2b
XR_003403339.2 other upstream 1685485 12068969 ~ 12075508 (-) False saysd1
TU348649 other upstream 1773024 12156508 ~ 12219294 (-) False LOC113532050

Expression Profile