G294303


Basic Information

Item Value
gene id G294303
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 12107942 ~ 12108160 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU348657
GTTAGTTATTTTTTGAGATAGTCATATATTGAGATAGTTGTAATCAGCAACGAACATTCAAGTGTAAGctaataatcatataaatatGCTGTCATGATTTATGTTAATTAACAGCACAGTAGAGAATATTAGTGCTAACTCTGGTATGCAGCAGTGACTGTCTTGTGTCCTGTAGCCACTGGCAATGAAAACCTGCAGTACtcaaagctctctctctct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU348657 True 219 lncRNA 0.36 1 12107942 12108160

Neighbor

gene id symbol gene type direction distance location
bpnt1 bpnt1,LOC107695986,LOC107712426,LOC107549527,LOC107729073 coding downstream 49467 12047193 ~ 12058475 (-)
mgat2 mgat2 coding downstream 392603 11711429 ~ 11715339 (-)
hsp90aa1.1 hsp90aa1.1,LOC108257813,LOC108411468,LOC103024454,LOC107704377,LOC107557012,LOC107564585,LOC106916349 coding downstream 410620 11692588 ~ 11697322 (-)
hsp90aa1.2 LOC108257811,LOC108411456,LOC101068853 coding downstream 415628 11686439 ~ 11692314 (-)
ppp2r5cb ppp2r5cb,LOC108257814,LOC108411434,LOC103025090,LOC107704375,LOC103369946 coding downstream 423762 11658684 ~ 11684180 (-)
slc30a1a slc30a1,LOC105895753,LOC108425602,LOC107594702,LOC107679773,LOC107666259 coding upstream 227132 12335292 ~ 12345693 (-)
nek2 nek2,LOC107712406 coding upstream 244718 12352878 ~ 12361063 (-)
lpgat1 lpgat1,LOC107695979,LOC107685762,LOC102781072 coding upstream 257119 12365279 ~ 12412879 (-)
ints7 ints7,LOC107659878,LOC107685756 coding upstream 306146 12414306 ~ 12433569 (-)
LOC113531824 NA coding upstream 432369 12540529 ~ 12549262 (-)
G294300 NA non-coding downstream 5296 12102422 ~ 12102646 (-)
LOC117599805 NA non-coding downstream 61599 12039551 ~ 12046343 (-)
G293904 NA non-coding downstream 382617 11675246 ~ 11725325 (-)
G293831 LOC108257904 non-coding downstream 572074 11502952 ~ 11535868 (-)
G293722 NA non-coding downstream 790913 11315246 ~ 11317029 (-)
G294320 NA non-coding upstream 27083 12135243 ~ 12135444 (-)
G294461 NA non-coding upstream 222253 12330413 ~ 12335201 (-)
G294482 NA non-coding upstream 277537 12385697 ~ 12386315 (-)
G294595 slc35b2,LOC107704052,LOC107568229,LOC107559116 non-coding upstream 490213 12598373 ~ 12603091 (-)
G294854 NA non-coding upstream 734363 12842523 ~ 12860847 (-)
saysd1 saysd1 other downstream 32434 12068969 ~ 12075508 (-)
id2b LOC108257525 other downstream 1361183 10743639 ~ 10746759 (-)
G293480 NA other downstream 1426252 10681310 ~ 10681690 (-)
LOC113531858 scg5,LOC107756590,LOC107601900,LOC107721307,LOC107549096 other downstream 1569836 10531994 ~ 10538106 (-)
LOC113545371 NA other downstream 2264470 9843369 ~ 9843472 (-)
G294369 NA other upstream 132829 12240989 ~ 12241901 (-)
LOC113531840 ccr6 other upstream 134419 12242579 ~ 12246178 (-)
rd3 rd3,LOC107695969,LOC107562313,LOC107712419,LOC107685781 other upstream 203522 12311682 ~ 12317936 (-)
tmem151ba tmem151b other upstream 451830 12559990 ~ 12568837 (-)
LOC113531878 prkd3,LOC101070414 other upstream 1939038 14047198 ~ 14104645 (-)

Expression


Co-expression Network