LOC113532335


Basic Information

Item Value
gene id LOC113532335
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 14391568 ~ 14394764 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU350218
GGTCGAAAATGGCTGTTCACGATCTTGACAGCACGGAGAGTTCACAGGGCCAGCcagatttattatataaaacagttttaaagatttttgGATCTTTGGATAACGTCGAGATCACCAAAAAACTTTGCGGACACGCCTACATTGAGTGACAAATATTAGTAACGAGTTTGGCCAAGTTCTGAACTGTGTCCTAACCACTGGTGAGGGAGCTGGCCTAGATGACTTGTGTCAAGGCATCGTCAAGCGTTACAAGGACGCAAGCGAGACAGGAGGAGGGTTACAGGAAAGCAGCCAGCCCCACAGACCAGAACAGGAAAGCAGCCAGCCCCACTGATCATTACTAAAGCTAATCACCAAAAAACTTTGCGGACATCGCTACATGGATAACCAATATTGGTAACGAATTTGGTCAAGTCCTGAACTGTGTCCTAACCACTGGTGAGGTAGCTGGCCTAGATGACTTGTGTCAAGGCATCGTCAAGCGTTACAAGGACGCTAAGGGGCCAGAGCCAGATGTGATTTATGTTTGACAGGGATTTCTGCAGCGAGACA
>XR_003403334.2
AAACCGGTCGAAAATGGCTGTTCACGATCTTGACAGCACGGAGAGTTCACAGGGCCAGCcagatttattatataaaacagttttaaagatttttgGATCTTTGGATAACGTCGAGATCACCAAAAAACTTTGCGGACACGCCTACATTGAGTGACAAATATTAGTAACGAGTTTGGCCAAGTTCTGAACTGTGTCCTAACCACTGGTGAGGGAGCTGGCCTAGATGACTTGTGTCAAGGCATCGTCAAGCGTTACAAGGACGCAAGCGAGACAGGAGGAGGGTTACAGGAAAGCAGCCAGCCCCACAGACCAGAACAGGAAAGCAGCCAGCCCCACTGATCATTACTAAAGCTAGTGAGTGTAATTCAATCATGTGCTCTCTACGTAGCAAAGAAAGCAATGTGGAGGTTTTCACTGAACATCTGTCAGACTACCATGCCCAATAATGTTGTGACTAGTGTGGTGCAAAattctggggtgcagttggacTGCTTCAGCACATTGAAAATGACCATCTATTGACTAGTCTGGAAGACCAAGGAGGAAAAACTGTGGATCCACCTACAGCTCCTCCCACATCATTTGTGATTCATCTTGTAGCTGCACAAGCACATTCATCAGTTGCTGCTGACACACAACAACCCAGTTAGACCCAAGAGCGGCAAGGAGCTCCACAAGGTGCACCCTACATACCATTCAAACCACACATTAATCTGAGGCTTCCAGAAGTGAATTGGGACTTTTCTCCCCAAGCAATTCTGTAGAGTAATTAAACCAGAAGACCAGAAGTGGATAGCACAGTGTCCTTATGACAGCACAGGACAGCTGAAGCAGCAATTTTCACAGAACTGGTTTTATCCACCAAGTCCTTGCAAGCCCACAACTTCACGTCCTGATCTGGATAGTTACTTCAGACAGCGCATGTTCTCACTGGCACCAACGCGGATGTGGGACATTCCTCTGAAATGCACACAGTGCAATGTGAAGATGCACCACTCAGGAATCTGCACAAAAGTGAGGGAAGTCATCGATATTGAATCCAGATATTACCTAATTGGAGCAGATTATCCTCACTGCAGTAAGTGTATGATTCCTGTCTGCCCTTGAAGTATGGCGATTCTTAAGCAACTTGATCCTGCCCATAGAAACAAATTTCTGGCTGTTCTCACAACCCAGCTTGCTCTTGACAGAAAATTTGTCACTCTGTTGAAGCCAAGAACTGTAGGGAACGGCTCAAGTTACTTTGCAGTAAGCACTTGAGGAAAGTCACAGTGAGAAGTGGGACGGACCGTAATCTATCGGTCAGATTGTGGGTTTCACAAGAAGATAAGTACCCTGACCCAGTCTGAAGCAATTTATCAGCGGCCACCAGCTTTGTTGCCCCTACCCCTGGCACAATGGTTTGAGACAGTCCATGCTGACGAGAGCCTGGGTCAT

Function

GO:

id name namespace
GO:0006996 organelle organization biological_process
GO:0070925 organelle assembly biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU350218 False 552 lncRNA 0.47 4 14391568 14394759
XR_003403334.2 True 1437 lncRNA 0.46 3 14391963 14394764

Neighbor

gene id symbol gene type direction distance location
lgals8a LOC108258055 coding downstream 36016 14345091 ~ 14355552 (-)
tmem242 tmem242,LOC107679673,LOC107555301 coding downstream 81303 14305201 ~ 14310265 (-)
trnaa-agc_14 NA coding downstream 265582 14125914 ~ 14125986 (-)
cebpz cebpz,LOC104960473 coding downstream 359462 14020127 ~ 14032106 (-)
LOC113532178 LOC108257557 coding downstream 384186 14004144 ~ 14007382 (-)
bcl11bb LOC108258024,LOC108426327,LOC103027528 coding upstream 162340 14557104 ~ 14588256 (-)
clu clu coding upstream 227093 14621857 ~ 14632266 (-)
LOC113532135 NA coding upstream 287418 14682182 ~ 14686085 (-)
ccdc25 ccdc25,LOC107675065 coding upstream 295400 14690164 ~ 14696661 (-)
pbk pbk,LOC107598104,LOC107717112,LOC107727585,LOC107676230,LOC107602197 coding upstream 313296 14708060 ~ 14713903 (-)
G295631 NA non-coding downstream 151032 14240396 ~ 14240536 (-)
G295491 NA non-coding downstream 281604 14109481 ~ 14109964 (-)
LOC113531851 NA non-coding downstream 477548 13908907 ~ 13914020 (-)
G295412 NA non-coding downstream 496721 13894330 ~ 13894847 (-)
G295287 NA non-coding downstream 611410 13779315 ~ 13780158 (-)
trnas-gcu_17 NA non-coding upstream 1343 14396107 ~ 14396188 (-)
trnas-gcu_18 NA non-coding upstream 2156 14396920 ~ 14397001 (-)
G295708 NA non-coding upstream 2383 14397147 ~ 14397385 (-)
G295753 NA non-coding upstream 123510 14518274 ~ 14518492 (-)
G295783 NA non-coding upstream 199652 14594416 ~ 14596412 (-)
trnas-gcu_15 NA other downstream 4872 14386615 ~ 14386696 (-)
trnas-gcu_12 NA other downstream 7753 14383581 ~ 14383815 (-)
trnas-gcu_10 NA other downstream 9220 14382087 ~ 14382348 (-)
LOC113531878 prkd3,LOC101070414 other downstream 286923 14047198 ~ 14104645 (-)
tmem151ba tmem151b other downstream 1822731 12559990 ~ 12568837 (-)
trnal-cag_12 NA other upstream 197371 14592135 ~ 14592475 (-)
trnal-cag_13 NA other upstream 199147 14593911 ~ 14593993 (-)
trnal-cag_14 NA other upstream 199785 14594549 ~ 14594631 (-)
trnal-cag_15 NA other upstream 201549 14596313 ~ 14596395 (-)
pex7 pex7,LOC107727680,LOC107676274 other upstream 331637 14726401 ~ 14772035 (-)

Expression


Co-expression Network