pbk (pbk,LOC107598104,LOC107717112,LOC107727585,LOC107676230,LOC107602197)


Basic Information

Item Value
gene id pbk
gene name pbk,LOC107598104,LOC107717112,LOC107727585,LOC107676230,LOC107602197
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 14708060 ~ 14713903 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923384.2
GCTGGGGGCGGGGTTAAGCAGCAGCTAAACCAATCGGAAGACTGTTGAAAGACGGGCGCGGACTTTCAAAAACCAGtaaaatggAGGCCGAGATTCAGTCACCGGACGCGTTTAAAACTCCGTGTAAACCGGCGAAGATGAAGAGTCCAGTTAGTGCATGTGGAACCCCGGTCACTATTCCAGCATCTCCGTTTATGAAGAAGCTCGGCTGTGGCACTGGTGTGAGCGTCTACCTCATGAACAGAAATGGAAAACAGACTCACTCGCCCTGGGCCGTTAAGAAGATCAACAGCAAGTGTGCAAAGACTCAGAAGAACGTGTACCAGAAGCGGTTGTGTGAGGAAGCAAAGATCTTAAAGGAACTGCAGCACCCAAATATTGTTGGCTTTAGAGCGTTCACCACAGCGAAGGATGGCTCGAAGTGTTTGGCGATGGAGTACGGAGGGGAGCAGTCTCTCAATGACCTGATtgaaaagaggagagaggagggcTTACAGGCTTTCCCAGTTGCCACTGTTGAAAAAGTGGCTCTTCATGTAGCTCATGGTTTGCAGTATCTGCACAATGAGAAAAAGCTTCTGCATGGAGACATGAAATCCTGCAACGTCGTCATAAAAGGCGACTTTGAGACCATCAAGATCTGCGACGTCGGAGTTTCCCTTAAGTTAGATGAAAATATGCAAGTGAGCGACCCGAAGGCCTACTACATCGGCACAGAGCCATGGAAACCCAAAGAGGCGCTGGAGGATGGACTAATCACCGACAAAGCAGACATCTTTGCGTATGGCCTCACCCTGTGGGAGATGATGACTCTCTCTGTGCCTCACCTAGAGATGCTCGACAGCGAGGGTGACTGTGATGATGACGACTCGTTTGATGAGGACGACTTTGATGAGGATGCGTATTACGAGAAGCTGGGAACCCGACCTCCGCTGGACGCAGCCACTCTGGGCGGCGCCTACCAGAAGATGGTGGAgcttttctgtctctgtacTGAGGAAGATCCCAGCAAAAGACCTTCAGCTGCTCACATCGTTCAGGCTCTGGAGTCCAACAGCCAGCTGGATGATAAACGCAGTGAGGTGATAGTTATAGATTAACAGCTGCTCACGTGTCTGATGGATGTTCCGTAGTCTTTTCTCACtgtactgtctgtctgtccttgtTTGAGTGTAACTTCTTTTCTGTCCTATTTTTAAACCTCTCTCTAAATCTATATAGAATTCACTCTACAGCTATCACCTACAactttattattgattttactGTATGTAGATTTAGACTTGTGTTCCAGTTATTAAACAGTTTGTAATTAATGTAA
>XM_034313481.1
GACTTTCAAAAACCAGGTTTGTTGTTAGGGAACTAGCTAGCTGAGTATCcgactaaataataaaataaagacagtcTATTTaacagtgtattaaaatggAGGCCGAGATTCAGTCACCGGACGCGTTTAAAACTCCGTGTAAACCGGCGAAGATGAAGAGTCCAGTTAGTGCATGTGGAACCCCGGTCACTATTCCAGCATCTCCGTTTATGAAGAAGCTCGGCTGTGGCACTGGTGTGAGCGTCTACCTCATGAACAGAAATGGAAAACAGACTCACTCGCCCTGGGCCGTTAAGAAGATCAACAGCAAGTGTGCAAAGACTCAGAAGAACGTGTACCAGAAGCGGTTGTGTGAGGAAGCAAAGATCTTAAAGGAACTGCAGCACCCAAATATTGTTGGCTTTAGAGCGTTCACCACAGCGAAGGATGGCTCGAAGTGTTTGGCGATGGAGTACGGAGGGGAGCAGTCTCTCAATGACCTGATtgaaaagaggagagaggagggcTTACAGGCTTTCCCAGTTGCCACTGTTGAAAAAGTGGCTCTTCATGTAGCTCATGGTTTGCAGTATCTGCACAATGAGAAAAAGCTTCTGCATGGAGACATGAAATCCTGCAACGTCGTCATAAAAGGCGACTTTGAGACCATCAAGATCTGCGACGTCGGAGTTTCCCTTAAGTTAGATGAAAATATGCAAGTGAGCGACCCGAAGGCCTACTACATCGGCACAGAGCCATGGAAACCCAAAGAGGCGCTGGAGGATGGACTAATCACCGACAAAGCAGACATCTTTGCGTATGGCCTCACCCTGTGGGAGATGATGACTCTCTCTGTGCCTCACCTAGAGATGCTCGACAGCGAGGGTGACTGTGATGATGACGACTCGTTTGATGAGGACGACTTTGATGAGGATGCGTATTACGAGAAGCTGGGAACCCGACCTCCGCTGGACGCAGCCACTCTGGGCGGCGCCTACCAGAAGATGGTGGAgcttttctgtctctgtacTGAGGAAGATCCCAGCAAAAGACCTTCAGCTGCTCACATCGTTCAGGCTCTGGAGTCCAACAGCCAGCTGGATGATAAACGCAGTGAGGTGATAGTTATAGATTAACAGCTGCTCACGTGTCTGATGGATGTTCCGTAGTCTTTTCTCACtgtactgtctgtctgtccttgtTTGAGTGTAACTTCTTTTCTGTCCTATTTTTAAACCTCTCTCTAAATCTATATAGAATTCACTCTACAGCTATCACCTACAactttattattgattttactGTATGTAGATTTAGACTTGTGTTCCAGTTATTAAACAGTTTGTAATTAATGTAA
>XM_034313482.1
AAAACCAGGTTTGTTGTTAGGGAACTAGCTAGCTGAGTATCcgactaaataataaaataaagacagtcTATTTaacagttaaaatggAGGCCGAGATTCAGTCACCGGACGCGTTTAAAACTCCGTGTAAACCGGCGAAGATGAAGAGTCCAGTTAGTGCATGTGGAACCCCGGTCACTATTCCAGCATCTCCGTTTATGAAGAAGCTCGGCTGTGGCACTGGTGTGAGCGTCTACCTCATGAACAGAAATGGAAAACAGACTCACTCGCCCTGGGCCGTTAAGAAGATCAACAGCAAGTGTGCAAAGACTCAGAAGAACGTGTACCAGAAGCGGTTGTGTGAGGAAGCAAAGATCTTAAAGGAACTGCAGCACCCAAATATTGTTGGCTTTAGAGCGTTCACCACAGCGAAGGATGGCTCGAAGTGTTTGGCGATGGAGTACGGAGGGGAGCAGTCTCTCAATGACCTGATtgaaaagaggagagaggagggcTTACAGGCTTTCCCAGTTGCCACTGTTGAAAAAGTGGCTCTTCATGTAGCTCATGGTTTGCAGTATCTGCACAATGAGAAAAAGCTTCTGCATGGAGACATGAAATCCTGCAACGTCGTCATAAAAGGCGACTTTGAGACCATCAAGATCTGCGACGTCGGAGTTTCCCTTAAGTTAGATGAAAATATGCAAGTGAGCGACCCGAAGGCCTACTACATCGGCACAGAGCCATGGAAACCCAAAGAGGCGCTGGAGGATGGACTAATCACCGACAAAGCAGACATCTTTGCGTATGGCCTCACCCTGTGGGAGATGATGACTCTCTCTGTGCCTCACCTAGAGATGCTCGACAGCGAGGGTGACTGTGATGATGACGACTCGTTTGATGAGGACGACTTTGATGAGGATGCGTATTACGAGAAGCTGGGAACCCGACCTCCGCTGGACGCAGCCACTCTGGGCGGCGCCTACCAGAAGATGGTGGAgcttttctgtctctgtacTGAGGAAGATCCCAGCAAAAGACCTTCAGCTGCTCACATCGTTCAGGCTCTGGAGTCCAACAGCCAGCTGGATGATAAACGCAGTGAGGTGATAGTTATAGATTAACAGCTGCTCACGTGTCTGATGGATGTTCCGTAGTCTTTTCTCACtgtactgtctgtctgtccttgtTTGAGTGTAACTTCTTTTCTGTCCTATTTTTAAACCTCTCTCTAAATCTATATAGAATTCACTCTACAGCTATCACCTACAactttattattgattttactGTATGTAGATTTAGACTTGTGTTCCAGTTATTAAACAGTTTGTAATTAATGTAA

Function

symbol description
pbk Predicted to enable ATP binding activity; MAP kinase kinase activity; and protein serine/threonine kinase activity. Predicted to act upstream of or within protein phosphorylation. Orthologous to human PBK (PDZ binding kinase).

NR:

description
lymphokine-activated killer T-cell-originated protein kinase homolog isoform X2

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08865 PBK; PDZ-binding kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923384.2 False 1321 mRNA 0.48 8 14708060 14713903
XM_034313481.1 True 1336 mRNA 0.46 8 14708060 14713843
XM_034313482.1 False 1324 mRNA 0.46 8 14708060 14713835

Neighbor

gene id symbol gene type direction distance location
ccdc25 ccdc25,LOC107675065 coding downstream 11399 14690164 ~ 14696661 (-)
LOC113532135 NA coding downstream 21975 14682182 ~ 14686085 (-)
clu clu coding downstream 75794 14621857 ~ 14632266 (-)
bcl11bb LOC108258024,LOC108426327,LOC103027528 coding downstream 119804 14557104 ~ 14588256 (-)
lgals8a LOC108258055 coding downstream 352508 14345091 ~ 14355552 (-)
LOC113532199 slc35d3 coding upstream 3936 14717839 ~ 14725117 (-)
hey2 hey2,LOC107717129,LOC107727582,LOC106571366 coding upstream 63174 14777077 ~ 14785071 (-)
tpd52l1 tpd52l1 coding upstream 129130 14843033 ~ 14861239 (-)
rnf217 rnf217 coding upstream 155157 14869060 ~ 14894454 (-)
nkain2 nkain2,LOC107598078,LOC107675106,LOC107727617 coding upstream 191221 14905124 ~ 15101973 (-)
G295836 NA non-coding downstream 19424 14688358 ~ 14688636 (-)
G295828 NA non-coding downstream 37750 14670101 ~ 14670310 (-)
G295827 NA non-coding downstream 38335 14669508 ~ 14669725 (-)
G295783 NA non-coding downstream 111648 14594416 ~ 14596412 (-)
G295753 NA non-coding downstream 189568 14518274 ~ 14518492 (-)
G295909 NA non-coding upstream 78637 14792540 ~ 14792749 (-)
G296237 NA non-coding upstream 609088 15322991 ~ 15323410 (-)
G296731 NA non-coding upstream 1438431 16152334 ~ 16155973 (-)
G296734 NA non-coding upstream 1443431 16157334 ~ 16165845 (-)
G296733 NA non-coding upstream 1449588 16163491 ~ 16165288 (-)
trnal-cag_15 NA other downstream 111665 14596313 ~ 14596395 (-)
trnal-cag_14 NA other downstream 113429 14594549 ~ 14594631 (-)
trnal-cag_13 NA other downstream 114067 14593911 ~ 14593993 (-)
trnal-cag_12 NA other downstream 115585 14592135 ~ 14592475 (-)
trnas-gcu_15 NA other downstream 321364 14386615 ~ 14386696 (-)
pex7 pex7,LOC107727680,LOC107676274 other upstream 12498 14726401 ~ 14772035 (-)
pkib pkib other upstream 559951 15273854 ~ 15304297 (-)
G296263 cx32,LOC108257940,LOC108424424 other upstream 749178 15463081 ~ 15482361 (-)
pln NA other upstream 1420231 16134134 ~ 16142616 (-)
G296802 igf2r other upstream 1841200 16555103 ~ 16557927 (-)

Expression


Co-expression Network