G295909


Basic Information

Item Value
gene id G295909
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 14792540 ~ 14792749 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU350466
GGTCGTAATAAAAGGAAATACAAACACTGCAATTCACAATTAacgttcaattcagttttatttgtatagagcctttaacaatagacattgtcacagagcagctatacagaaatcaggatgtagatttagatccctaatgaagaATCCAGAGACAACAGTGGAAAGGAAAACTACCTAAGAAGACATGAGAAAGAAAGCTGGAGAAGagcc

Function

GO: NA

KEGG:

id description
ko04113 Meiosis - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
TU350466 True 210 lncRNA 0.36 1 14792540 14792749

Neighbor

gene id symbol gene type direction distance location
hey2 hey2,LOC107717129,LOC107727582,LOC106571366 coding downstream 7469 14777077 ~ 14785071 (-)
LOC113532199 slc35d3 coding downstream 67423 14717839 ~ 14725117 (-)
pbk pbk,LOC107598104,LOC107717112,LOC107727585,LOC107676230,LOC107602197 coding downstream 78637 14708060 ~ 14713903 (-)
ccdc25 ccdc25,LOC107675065 coding downstream 95879 14690164 ~ 14696661 (-)
LOC113532135 NA coding downstream 106455 14682182 ~ 14686085 (-)
tpd52l1 tpd52l1 coding upstream 50284 14843033 ~ 14861239 (-)
rnf217 rnf217 coding upstream 76311 14869060 ~ 14894454 (-)
nkain2 nkain2,LOC107598078,LOC107675106,LOC107727617 coding upstream 112375 14905124 ~ 15101973 (-)
clvs2 clvs2,LOC107675233,LOC107675107 coding upstream 404187 15196936 ~ 15226775 (-)
smpdl3a smpdl3a coding upstream 441188 15233937 ~ 15244412 (-)
G295836 NA non-coding downstream 103904 14688358 ~ 14688636 (-)
G295828 NA non-coding downstream 122230 14670101 ~ 14670310 (-)
G295827 NA non-coding downstream 122815 14669508 ~ 14669725 (-)
G295783 NA non-coding downstream 196128 14594416 ~ 14596412 (-)
G295753 NA non-coding downstream 274048 14518274 ~ 14518492 (-)
G296237 NA non-coding upstream 530242 15322991 ~ 15323410 (-)
G296731 NA non-coding upstream 1359585 16152334 ~ 16155973 (-)
G296734 NA non-coding upstream 1364585 16157334 ~ 16165845 (-)
G296733 NA non-coding upstream 1370742 16163491 ~ 16165288 (-)
LOC117599726 NA non-coding upstream 1546333 16339082 ~ 16342070 (-)
pex7 pex7,LOC107727680,LOC107676274 other downstream 20505 14726401 ~ 14772035 (-)
trnal-cag_15 NA other downstream 196145 14596313 ~ 14596395 (-)
trnal-cag_14 NA other downstream 197909 14594549 ~ 14594631 (-)
trnal-cag_13 NA other downstream 198547 14593911 ~ 14593993 (-)
trnal-cag_12 NA other downstream 200065 14592135 ~ 14592475 (-)
pkib pkib other upstream 481105 15273854 ~ 15304297 (-)
G296263 cx32,LOC108257940,LOC108424424 other upstream 670332 15463081 ~ 15482361 (-)
pln NA other upstream 1341385 16134134 ~ 16142616 (-)
G296802 igf2r other upstream 1762354 16555103 ~ 16557927 (-)
ttc32 ttc32 other upstream 2250417 17043166 ~ 17046831 (-)

Expression


Co-expression Network