G296802 (igf2r)


Basic Information

Item Value
gene id G296802
gene name igf2r
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 16555103 ~ 16557927 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU351456
tcttttttattgaaataatgtAATGTCTCAGTAtgaacttttttaaatacaaaacaaaaaagagcagATAAGCAAACAATTCAAAAGAAATTTTGGCAGAAAGAAGGCCATCAGTAGGAGGCTCTGTATATGTgattcaaataataaaaaaaaaaaagacacgtACCAAGTTTATGTGTACAGAGAGGAGTTAGTGACACCTTCAAACATTCAACCTCATCAGTAGTCTTTCTGCAAATCACAAAACCTTTCAGAGAAGTCATTTGGGCTCATCGCATTCAGACACGGTATGAAACATTAACGTCCCATGTCAAAAACAGGCCACTTCAGGACAAATCGACAGGAAGTTGGTTTATGATCAAATCGTACTATTTAGTCAAAACTACAactgcagaaaaacagaaaaaaaggctgtttgggggaaaaaaacccacatcacGTGTCACAGTCTTGAGTCTAAGGCCAAAATCACACTGTTATCGTCACCTTACAACTTTTAAACCCTCATCCAGTGCTGAAAATATAATCCGAGTGCATCGTAAGTATGACTTTTTACATACAATAACTGTGCAAGTAATTCATTTAACaattattaaaatgcacaataatacctgaaaagcaaaaatcagaaaaagctGAAACAAAGACTGAGACAATAAGTTTCAGTGAGCTCATGGAGGGAAAAGAGATCTCCCAGCGTTAAAATACTGCGCATGTTCTGGGTAAGGGTTACACAGCATGCTTTTATGGCAAAAAGGGAAGTTAAAGCAATGCAGGACACGTCCCTTTACTCGAAATGGTTTGGTATTTAAAAGGAAGTGGCAGATacaaagcagatttttttatCCTGTGGGGCAAGTGATGCAAAAAGcatacagtggaaaaaaaacatctgataAAACGTTAATGCGATTCCTCGTGGCTCCATGTGCAAAAATACTGGGAACCTCTAACACAGGATTTTCCGTATTCACGACTGGCTACCGGTTGCCGTGGAAATAAGGGAGATGAATACAACTGAAATCAAAAAAATCAACCCATATACTTAAGTAACAGATCATAACccatcttttttttgtcttcacatAGAAGAACATCTCTGTACAAATCAATTTTTAACCAAATCGACCCGActctgagaaagaaagacacaaacaattaaatgatgaaatattttcatcacCAAGGCATCGACTGTCCGTTTGATAAGCACTGAACAGATATAAATAGATTTccctttagaaaaaaaatcaacaacaaataAATCGACTAAATGACCAGAGCGAGTTTAGAGGGACGTTCAGAAGTTCATGACAGGAATCCTCAGACTTTAAGGAGGTCCTCGTCGCTGTCGTCTGGGTCTCCCTGCGCTTTCCTCGGATGTCTGGAGCTCGGTTTGGACGTGTTCTTTCTCCCCGTGTCGTCCAGCAGCCCCACCAGATCCTCATCGCTCTCGTTCTTCTTCAGGAAacgagaggaggaagaagaagcgGAGACTCGTCCCGAGTGGACTCGAACTCCGGGGATGGTCAGCACTTCTTCCTCGCTGTCCTGCTCGTCTAGGGAGAAGGAGCGCAGCGCGTCAGCACTCACCGGTTTGGTGGTGATGTGGCCGTTCTCGTGAGGTGTCTGCGCCGGAATCTCCACCTCCTCCATCAGCCACTCCATCTCGTCCTCACAGCCGTCCTCGTCCATGCTCACCaccttGGAGTATTTATAGGACACTTGATTTCTCCGTTTGCAGCAGCTGGTGAGTTTCTGTATAAAAAGCC
>TU351457
tcttttttattgaaataatgtAATGTCTCAGTAtgaacttttttaaatacaaaacaaaaaagagcagATAAGCAAACAATTCAAAAGAAATTTTGGCAGAAAGAAGGCCATCAGTAGGAGGCTCTGTATATGTgattcaaataataaaaaaaaaaaagacacgtACCAAGTTTATGTGTACAGAGAGGAGTTAGTGACACCTTCAAACATTCAACCTCATCAGTAGTCTTTCTGCAAATCACAAAACCTTTCAGAGAAGTCATTTGGGCTCATCGCATTCAGACACGGTATGAAACATTAACGTCCCATGTCAAAAACAGGCCACTTCAGGACAAATCGACAGGAAGTTGGTTTATGATCAAATCGTACTATTTAGTCAAAACTACAactgcagaaaaacagaaaaaaaggctgtttgggggaaaaaaacccacatcacGTGTCACAGTCTTGAGTCTAAGGCCAAAATCACACTGTTATCGTCACCTTACAACTTTTAAACCCTCATCCAGTGCTGAAAATATAATCCGAGTGCATCGTAAGTATGACTTTTTACATACAATAACTGTGCAAGTAATTCATTTAACaattattaaaatgcacaataatacctgaaaagcaaaaatcagaaaaagctGAAACAAAGACTGAGACAATAAGTTTCAGTGAGCTCATGGAGGGAAAAGAGATCTCCCAGCGTTAAAATACTGCGCATGTTCTGGGTAAGGGTTACACAGCATGCTTTTATGGCAAAAAGGGAAGTTAAAGCAATGCAGGACACGTCCCTTTACTCGAAATGGTTTGGTATTTAAAAGGAAGTGGCAGATacaaagcagatttttttatCCTGTGGGGCAAGTGATGCAAAAAGcatacagtggaaaaaaaacatctgataAAACGTTAATGCGATTCCTCGTGGCTCCATGTGCAAAAATACTGGGAACCTCTAACACAGGATTTTCCGTATTCACGACTGGCTACCGGTTGCCGTGGAAATAAGGGAGATGAATACAACTGAAATCAAAAAAATCAACCCATATACTTAAGTAACAGATCATAACccatcttttttttgtcttcacatAGAAGAACATCTCTGTACAAATCAATTTTTAACCAAATCGACCCGActctgagaaagaaagacacaaacaattaaatgatgaaatattttcatcacCAAGGCATCGACTGTCCGTTTGATAAGCACTGAACAGATATAAATAGATTTccctttagaaaaaaaatcaacaacaaataAATCGACTAAATGACCAGAGCGAGTTTAGAGGGACGTTCAGAAGTTCATGACAGGAATCCTCAGACTTTAAGGAGGTCCTCGTCGCTGTCGTCTGGGTCTCCCTGCGCTTTCCTCGGATGTCTGGAGCTCGGTTTGGACGTGTTCTTTCTCCCCGTGTCGTCCAGCAGCCCCACCAGATCCTCATCGCTCTCGTTCTTCTTCAGGAAacgagaggaggaagaagaagcgGAGACTCGTCCCGAGTGGACTCGAACTCCGGGGATGGTCAGCACTTCTTCCTCGCTGTCCTGCTCGTCTAGGGAGAAGGAGCGCAGCGCGTCAGCACTCACCGGTTTGGTGGTGATGTGGCCGTTCTCGTGAGGTGTCTGCGCCGGAATCTCCACCTCCTCCATCAGCCACTCCATCTCGTCCTCACAGCCGTCCTCGTCCATGCTCACCTGGGACACAGCCGGATTATACGTAACTAATCCATCCAGGACTGGAtatgatattgtgtgtgtaacatTCCAGAGAACAGAAGAAATGCTGCTCTATAACTGTTTCTGAATCCAGATTAATACTTGTTAACCTGGCCTTGAAGTAGCTCTTACGTCTTTCACAGTGACGTGCGCAAGTtttcaccccccttgaacttttcTGATGGAAAATAGTTATGCCGAAACTAATTTTGGGGTTTCACCTTTGCTGTGAAAACTGGGTTTTACTTTTaccaaattttat

Function

symbol description
igf2r Predicted to enable insulin-like growth factor binding activity. Predicted to act upstream of or within lysosomal transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in late endosome; plasma membrane; and trans-Golgi network. Is expressed in nervous system; presumptive neural retina; and somite. Human ortholog(s) of this gene implicated in diabetes mellitus (multiple); hepatocellular carcinoma; in situ carcinoma (multiple); and nephroblastoma. Orthologous to human IGF2R (insulin like growth factor 2 receptor).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU351456 False 1772 TUCP 0.42 2 16555103 16557927
TU351457 True 1984 TUCP 0.41 2 16555476 16557927

Neighbor

gene id symbol gene type direction distance location
trnal-cag_16 NA coding downstream 48190 16506831 ~ 16506913 (-)
rfx6 rfx6,LOC102193265,LOC102778618 coding downstream 66534 16471442 ~ 16488569 (-)
vgll2a vgll2,LOC107678819 coding downstream 126731 16420761 ~ 16428372 (-)
dcbld1 dcbld1 coding downstream 156843 16362102 ~ 16398260 (-)
LOC113531921 LOC108257860 coding downstream 221032 16327581 ~ 16334071 (-)
plg plg coding upstream 12486 16570413 ~ 16588520 (-)
gpr31 gpr31 coding upstream 39189 16597116 ~ 16600571 (-)
ttll2 ttll2 coding upstream 60547 16618474 ~ 16622145 (-)
LOC113531776 unc93a,LOC108257541,LOC108257560 coding upstream 67692 16625619 ~ 16644757 (-)
LOC113532136 LOC108257755 coding upstream 251951 16809878 ~ 16812493 (-)
LOC117599726 NA non-coding downstream 213033 16339082 ~ 16342070 (-)
G296734 NA non-coding downstream 389258 16157334 ~ 16165845 (-)
G296733 NA non-coding downstream 389815 16163491 ~ 16165288 (-)
G296731 NA non-coding downstream 399130 16152334 ~ 16155973 (-)
G296237 NA non-coding downstream 1231693 15322991 ~ 15323410 (-)
G296823 NA non-coding upstream 33986 16591913 ~ 16592120 (-)
G296835 NA non-coding upstream 56613 16614540 ~ 16614771 (-)
G296965 NA non-coding upstream 183314 16741241 ~ 16807322 (-)
G296993 NA non-coding upstream 287188 16845115 ~ 16846008 (-)
G296994 NA non-coding upstream 288194 16846121 ~ 16847214 (-)
pln NA other downstream 412487 16134134 ~ 16142616 (-)
G296263 cx32,LOC108257940,LOC108424424 other downstream 1072742 15463081 ~ 15482361 (-)
pkib pkib other downstream 1250806 15273854 ~ 15304297 (-)
pex7 pex7,LOC107727680,LOC107676274 other downstream 1783068 14726401 ~ 14772035 (-)
trnal-cag_15 NA other downstream 1958708 14596313 ~ 14596395 (-)
ttc32 ttc32 other upstream 485239 17043166 ~ 17046831 (-)
gtf2h5 gtf2h5,tf2h5,LOC107721375,LOC107659223 other upstream 676050 17233977 ~ 17236129 (-)
esr1 esr1 other upstream 927657 17485584 ~ 17506658 (-)
acot20 LOC108257587,LOC108257591 other upstream 1149359 17707286 ~ 17715272 (-)
dpf3 dpf3,LOC108257599,LOC108424513,LOC107659173,LOC107721322,LOC107668213,LOC107562702,LOC107602065,LOC107756570 other upstream 1514618 18072545 ~ 18105993 (-)

Expression


Co-expression Network