RNA id: TU351457


Basic Information

Item Value
RNA id TU351457
length 1984
RNA type TUCP
GC content 0.41
exon number 2
gene id G296802
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 16555103 ~ 16557927 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tcttttttattgaaataatgtAATGTCTCAGTAtgaacttttttaaatacaaaacaaaaaagagcagATAAGCAAACAATTCAAAAGAAATTTTGGCAGAAAGAAGGCCATCAGTAGGAGGCTCTGTATATGTgattcaaataataaaaaaaaaaaagacacgtACCAAGTTTATGTGTACAGAGAGGAGTTAGTGACACCTTCAAACATTCAACCTCATCAGTAGTCTTTCTGCAAATCACAAAACCTTTCAGAGAAGTCATTTGGGCTCATCGCATTCAGACACGGTATGAAACATTAACGTCCCATGTCAAAAACAGGCCACTTCAGGACAAATCGACAGGAAGTTGGTTTATGATCAAATCGTACTATTTAGTCAAAACTACAactgcagaaaaacagaaaaaaaggctgtttgggggaaaaaaacccacatcacGTGTCACAGTCTTGAGTCTAAGGCCAAAATCACACTGTTATCGTCACCTTACAACTTTTAAACCCTCATCCAGTGCTGAAAATATAATCCGAGTGCATCGTAAGTATGACTTTTTACATACAATAACTGTGCAAGTAATTCATTTAACaattattaaaatgcacaataatacctgaaaagcaaaaatcagaaaaagctGAAACAAAGACTGAGACAATAAGTTTCAGTGAGCTCATGGAGGGAAAAGAGATCTCCCAGCGTTAAAATACTGCGCATGTTCTGGGTAAGGGTTACACAGCATGCTTTTATGGCAAAAAGGGAAGTTAAAGCAATGCAGGACACGTCCCTTTACTCGAAATGGTTTGGTATTTAAAAGGAAGTGGCAGATacaaagcagatttttttatCCTGTGGGGCAAGTGATGCAAAAAGcatacagtggaaaaaaaacatctgataAAACGTTAATGCGATTCCTCGTGGCTCCATGTGCAAAAATACTGGGAACCTCTAACACAGGATTTTCCGTATTCACGACTGGCTACCGGTTGCCGTGGAAATAAGGGAGATGAATACAACTGAAATCAAAAAAATCAACCCATATACTTAAGTAACAGATCATAACccatcttttttttgtcttcacatAGAAGAACATCTCTGTACAAATCAATTTTTAACCAAATCGACCCGActctgagaaagaaagacacaaacaattaaatgatgaaatattttcatcacCAAGGCATCGACTGTCCGTTTGATAAGCACTGAACAGATATAAATAGATTTccctttagaaaaaaaatcaacaacaaataAATCGACTAAATGACCAGAGCGAGTTTAGAGGGACGTTCAGAAGTTCATGACAGGAATCCTCAGACTTTAAGGAGGTCCTCGTCGCTGTCGTCTGGGTCTCCCTGCGCTTTCCTCGGATGTCTGGAGCTCGGTTTGGACGTGTTCTTTCTCCCCGTGTCGTCCAGCAGCCCCACCAGATCCTCATCGCTCTCGTTCTTCTTCAGGAAacgagaggaggaagaagaagcgGAGACTCGTCCCGAGTGGACTCGAACTCCGGGGATGGTCAGCACTTCTTCCTCGCTGTCCTGCTCGTCTAGGGAGAAGGAGCGCAGCGCGTCAGCACTCACCGGTTTGGTGGTGATGTGGCCGTTCTCGTGAGGTGTCTGCGCCGGAATCTCCACCTCCTCCATCAGCCACTCCATCTCGTCCTCACAGCCGTCCTCGTCCATGCTCACCTGGGACACAGCCGGATTATACGTAACTAATCCATCCAGGACTGGAtatgatattgtgtgtgtaacatTCCAGAGAACAGAAGAAATGCTGCTCTATAACTGTTTCTGAATCCAGATTAATACTTGTTAACCTGGCCTTGAAGTAGCTCTTACGTCTTTCACAGTGACGTGCGCAAGTtttcaccccccttgaacttttcTGATGGAAAATAGTTATGCCGAAACTAATTTTGGGGTTTCACCTTTGCTGTGAAAACTGGGTTTTACTTTTaccaaattttat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004580104.1 lncRNA downstream 213406 16339082 ~ 16342070 (-) True LOC117599726
TU351367 lncRNA downstream 389631 16157334 ~ 16165845 (-) True G296734
TU351366 lncRNA downstream 390188 16163491 ~ 16165288 (-) True G296733
TU351364 lncRNA downstream 399503 16152334 ~ 16155973 (-) True G296731
TU351351 lncRNA downstream 412860 16134134 ~ 16142616 (-) True pln
TU351480 lncRNA upstream 33986 16591913 ~ 16592120 (-) True G296823
TU351493 lncRNA upstream 56613 16614540 ~ 16614771 (-) True G296835
TU351652 lncRNA upstream 183314 16741241 ~ 16807322 (-) True G296965
TU351686 lncRNA upstream 287188 16845115 ~ 16846008 (-) True G296993
TU351687 lncRNA upstream 288194 16846121 ~ 16847214 (-) True G296994
XM_034313841.1 mRNA downstream 66907 16471442 ~ 16488569 (-) True rfx6
XM_034313842.1 mRNA downstream 69235 16471442 ~ 16486241 (-) False rfx6
XM_026923501.2 mRNA downstream 127104 16420761 ~ 16428372 (-) False vgll2a
XM_026923500.2 mRNA downstream 127105 16420761 ~ 16428371 (-) True vgll2a
XM_026923612.2 mRNA downstream 157216 16362102 ~ 16398260 (-) True dcbld1
XM_026923762.2 mRNA upstream 12486 16570413 ~ 16588520 (-) False plg
XM_026923761.2 mRNA upstream 12486 16570413 ~ 16588520 (-) True plg
XM_026922778.2 mRNA upstream 39189 16597116 ~ 16600571 (-) True gpr31
XM_026923659.2 mRNA upstream 60547 16618474 ~ 16622145 (-) True ttll2
XM_034313493.1 mRNA upstream 60547 16618474 ~ 16620858 (-) False ttll2
trnal-cag_16 other downstream 48563 16506831 ~ 16506913 (-) True trnal-cag_16
XR_003403300.2 other downstream 412872 16134167 ~ 16142604 (-) False pln
trnav-cac_21 other downstream 776177 15779227 ~ 15779299 (-) True trnav-cac_21
trnad-guc_29 other downstream 781296 15774109 ~ 15774180 (-) True trnad-guc_29
trnav-cac_19 other downstream 781514 15773890 ~ 15773962 (-) True trnav-cac_19
TU351727 other upstream 485386 17043313 ~ 17046810 (-) False ttc32
TU352481 other upstream 1149359 17707286 ~ 17715244 (-) False acot20
XR_003404857.2 other upstream 1517435 18075362 ~ 18105993 (-) False dpf3
TU353207 other upstream 2520077 19078004 ~ 19083465 (-) False ubr7
LOC113547697 other upstream 2707900 19265827 ~ 19267009 (-) True LOC113547697

Expression Profile