RNA id: TU351364


Basic Information

Item Value
RNA id TU351364
length 3506
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id G296731
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 16152334 ~ 16155973 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAAATCTTTAACCTGCCTGCAGCTTACACTGGAGCACAGAAGTCACATCACTGTTTTttactgccccctgctggctcATTTTTATAGTCTACAGTAACAGTGTGTCATCGTCAGCATCCTGTTAAGCCAATTAGCGTAGCTTAATCAGCTGCTGTAACGTCCGAGCGTGCTGATTTCTGTACAGGTAATATCAGCCTGTCACTGAGTGTTTGTTTTCAACAGGAATATTAATTCCTCTCAGCCTGCACATGTTACAGGAGGCAGTGATGTGGATTTAATCAAGGGTGAGTAGCTTGTTCATAAACAATAAAAGCGAGCATGTTGTCACATTAGAGGCTCTTTTACGGGCGTGTTAGCACAGCCACGGGGGACAGGCGCTCCGGAACCGGCGTTGTTAATACACAAATGTGTTCATTACACTTTAATCAACTAAACTCACTGCTGGAATTCATTTAGAGATTAATAGTGGAGGGTTTAGGTAAAGACACGCTGGAACACATATGAAGATCAGCTTGAAGCTTGGAGCACAGCGTGTACAAGCGCAGCACGTGTTTCTGtaactgggtgtgtgtgttcagtgtgtattatggaggagaagaagaagaaaaaaaaaaatacaggtcTTTGTGTTTGAATAGCGGACTGACCTTCCTAAGACCCTAATCAGTGCACAAAGAGGGAAAGAGGCAGAAaccacaacccaccattatcacaGTTATTATACATGATGTCTGGAATCCAATGACAATTTTCATAAAATTGGTTATTTGGACTCAACGCtcagggacaaaaaaaaaaccctctggcTCCAATAAGTATCCAAATTGGATTCAAATactgcacacatttaaataatgtgcctagtttttttaagagattttttttgtgaaaataaatacattttttattattattcagaacgtttatttattttatttcactcagTTTCAGGAACCACTTTGTCTTGGTCAGgaagaaatatatttacagaaatatataaattcaggatataactTTACTCTTTTCACTGTTCACTATCTCAGAGGAGCCTAAAGATAAAAGCGTTTGCCTAGTTACAGCACTCCGGGCCTAAATATACAGTCAGCTTGTTTTGTTGTGAGCTGAGTGATGCCTGAGatttactgtgtttattaatCAACACCACCTACAGCCCGGCTTTTTCATAACTCATGCTGTGACACTGGCATaaactaaacaacaacaaaaaaaagttccacATATTTTATTgcaatgcctttttttttttttttttttttaaatatattcagagTAATTGCTCAGTTCAGCTGAAATAAACAAGTCATTATGGACACTCGAGCACCAGAGGCGCAGAGTACTGATGCACTGTGTCTCATGATCAgctattattttattccttattcagTTTTGTTAGCATAAGTGATCAAAAGCAGGCAAAATGGCACAGTAGCACTAATGGtatacagcgtgtgtgtgtgtgtgtctgtgtctgtgcgtgtgtgtgtgtgtgtgtgtgtacctgctggGCCTGGGTGTGCACCTCGTCCAGCGAGGGCAGATCTGCCAGGTATTTCTCTAAAGTCTCGATGCGCTGCTGCTTTTCCTGATTCTGCTCCTGCTCTCGCTGACATTTCTTCTTTAGACTGCTGATGTAGCGATCACGGGTCTTCATctagaccacacacacacacaaacaaacacttttttaattaatctaaaAACTATAATCAAATCAAGATTGTCTTCTAAAAGTGTGCTTAACTGAAAATCTGATTATAATTAGATATTATAAAGCCAAAAGAAACAGGATTTTTGGTAATGTCAAGAAAAATTTTAGTAGTGACACCATCgtgtctctctgtatctatAATAGTCCatcgttaataaattaaaaattgtaatccatgtgaaagtgctgtggtataagaggaataaaacacttatggaggtgctgttataggaaaataatcaactttggggtgtaacagtaactctgacaTGCATCagtcgcatcacaccaccctgtcgttgattattttccgaaaACAGCACACCCCTGCGTGTGATATTCGCGCAGTGGTCCTTCCCACAGTATGTGAGAGAAGTCTAAAACGCAGCAGACCTTCTCCTCCAGCTTCTTGATGTcctctgtgtatttctgtgtgttctGCTTGAGGAACTCTTTGAGGTGGATGACCTCGAGCTCGGCTGAGGCCAGCCTGCGCGCCAGCTCTCCGTTCTCGCAGCACAGTGGAGTCTGAGGACTGTGTAGAGACGATGCAGGGCTGTCCAGCGGGCTCTCCTTGTTTTAAGCACATACGAGTCGTCACAGCGCCCTCTCTGGTTCTGGAGGACCTGCTGCGCCCTTAACTCGTTTTCCCTGATTCTGGCGTGGAGCTGCATGATCTGCTGCTTTTGCCTGGAAAATACAAAGAcgtgagaaaaaaacagaaaagaaaacaggatcTTTGCATATCAGGACTGCaactattaattattttgttgttcGCGCTCCTTTAATGACTGCGTGACGGCATACAACATAAATGTCATTATCCAACATAAAAGTCATAGTGAAACAAAAGCCACTTTCAAAACACTCTTCTACAATTAACGGGAATTAAAAAGAATTGATGTGTGAAAAGAAGCTGATACATTACTGGGAAAGAGAATTGTATCTAATGACTATCTGATGACGCACAGATAGCACAGTAAACCGGTAACGTGAGGTAAAGTCTAAACATCTGGAAAGTGGAGTCAATCAGAAATGAACGCTCATGCCTAGGATGAAATTCTTCGTGAGCGAGAGAAGCTGGAGGTGCAACAAACTTCAGTGTACAGCTGAAAAGGATTTTACAAGCACTGAATAATGTGTGTTTCCAAATGAGTATCGGTATAATCAATCTGAAAAccacacttaaaaaaataatacttatgTTTCATAATTAACCATAATCTTAATTAAGTTTGTTACTGCAGTTCAAAATGTGTCCAGGAGGCGGCAGTGATGCATTAATAGTCTGTACAGgtatataatatgaaataacatCGAGAGTTATTACCACAACTAATTTTGATCATTATTGCAAAACAGAAATTTAATAACACACGAGTCTAAAAAATGATCAGCTAAGATACTGAGCTGAACAGCAGAATGTGTAAAGtgacagttaaaataaatacatcagcAATAACCCACTTGCTTTCAGGGAACTTAAGAAATAGCTGACAGCGTAAGAGTCGTACCTGTGACAGAATTAAAGTaaggtaaatttaaaaaatgtgtttgtaggTGTTCAGCTTCTTCACTCCTCAGTCCCCCAGCATTATACCTTTTTGTTTTCCATTCTGGATTTCAATGGCTGTTTAAGCAATAACATCTGATTtgtttaaacacaaacaaacacacaaccagTAATTCAAAAGTTAGTATTGGGGACTCGTGTTTTTGATAAATAGTTGTCATTATAAAGTAGCACGTCATTTAGGTCACATGACTCTTTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU351347 lncRNA downstream 9718 16134134 ~ 16142616 (-) False pln
TU351348 lncRNA downstream 9718 16134134 ~ 16142616 (-) False pln
TU351350 lncRNA downstream 9718 16134134 ~ 16142616 (-) False pln
TU351351 lncRNA downstream 9718 16134134 ~ 16142616 (-) True pln
TU350834 lncRNA downstream 828924 15322991 ~ 15323410 (-) True G296237
TU351367 lncRNA upstream 1361 16157334 ~ 16165845 (-) True G296734
TU351366 lncRNA upstream 7518 16163491 ~ 16165288 (-) True G296733
XR_004580104.1 lncRNA upstream 183109 16339082 ~ 16342070 (-) True LOC117599726
TU351480 lncRNA upstream 435940 16591913 ~ 16592120 (-) True G296823
TU351493 lncRNA upstream 458567 16614540 ~ 16614771 (-) True G296835
XM_026922822.2 mRNA downstream 9730 16134167 ~ 16142604 (-) False pln
XM_026923258.2 mRNA downstream 645619 15504864 ~ 15506715 (-) True hsdl1
XM_026923277.2 mRNA downstream 648102 15500285 ~ 15504232 (-) True cx34.5
XM_026923276.2 mRNA downstream 648141 15500285 ~ 15504193 (-) False cx34.5
XM_026922585.2 mRNA downstream 653180 15496878 ~ 15499154 (-) True cx32.3
XM_026922782.2 mRNA upstream 10456 16166429 ~ 16181922 (-) True si:dkeyp-114g9.1
XM_026922908.2 mRNA upstream 28280 16184253 ~ 16299085 (-) True slc35f1
XM_034313953.1 mRNA upstream 157638 16313611 ~ 16326865 (-) True nus1
XM_034313852.1 mRNA upstream 171608 16327581 ~ 16334071 (-) True LOC113531921
XM_026923612.2 mRNA upstream 206129 16362102 ~ 16398260 (-) True dcbld1
XR_003403300.2 other downstream 9730 16134167 ~ 16142604 (-) False pln
trnav-cac_21 other downstream 373035 15779227 ~ 15779299 (-) True trnav-cac_21
trnad-guc_29 other downstream 378154 15774109 ~ 15774180 (-) True trnad-guc_29
trnav-cac_19 other downstream 378372 15773890 ~ 15773962 (-) True trnav-cac_19
trnad-guc_28 other downstream 381451 15770812 ~ 15770883 (-) True trnad-guc_28
trnal-cag_16 other upstream 350858 16506831 ~ 16506913 (-) True trnal-cag_16
TU351456 other upstream 399130 16555103 ~ 16557927 (-) False G296802
TU351457 other upstream 399503 16555476 ~ 16557927 (-) True G296802
TU351727 other upstream 887340 17043313 ~ 17046810 (-) False ttc32
TU352481 other upstream 1551313 17707286 ~ 17715244 (-) False acot20

Expression Profile