slc35f1 (slc35f1,LOC107678858,LOC107727669,LOC107697151,LOC107743307,LOC106571386)


Basic Information

Item Value
gene id slc35f1
gene name slc35f1,LOC107678858,LOC107727669,LOC107697151,LOC107743307,LOC106571386
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 16184253 ~ 16299085 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922908.2
CTTTCAGTCCGGCGGTGGCGTTCACACgctcatacacactctcacacacactctctctcacacacgtcCTCCCTCCTCGTCCTGGACATGAACACCTGATTTTTCTCACCTGCATGATGGAGAGCTAGacggtcaaaaaaaaaaaacaaaaaacaaaacaccagcTGAATGAATTCAAAGAGCGCCATGCCCTGCGCTTTCtgactcgcacacacacacgtttccagccgtgagagagtgagagagaggagagagagaggagagagagagatgattcAGCCCGAGCTCCACAATCATGTGGCTCCTAACACGGAGCCCAGTCCTGCAGACACAGCTCCAGCATCCCTCAGCCTGCTGCACAGGATCCGGAGAGTCTTCACCAGGGAGCTCCTCCTCACACTAGCGCTCGGTCAGGTCCTGTCTCTGCTCATCTGCGGGATCGGACTGACCAGCAAGTACCTGGCCACTGATTACCACGCCAACACACCCGTGTTCCAGTGCTTTCTCAACTACATCCTGCTGTTCCTGGTCTACACCACCACACTCGCAGTCAGGCAGGGAGAGGAGAATTTACTGGCAATCCTGAAGAGACGATGGTGGAAGTACATGATCCTCGGCGTGATTGATATCGAAGCCAACTACCTGGTCATTAAAGCTTACCAATACACCACACTTACCAGTGTACAGCTACTGGACTGCTTTGTCATCCCCGTCGTGCTCCTGCTGTCCTGGTTCTTCCTGCTGGTGAGGTATAAGGTGGTGCATTTCGTCGGCGTGGGCGTCTGCCTGCTCGGGATCGGCTGCATGGTAGGAGCCGACGTGCTGGTGGGACGACAGCAGGGTCTTGGGGACCATAAGCTGCTCGGAGACCTGCTTGTTCTGGCCGGTGCCACACTATACGGCATCTCTAATGTGTGTGAGGAATTCATTGTGAAGAACTTGAGTCGTGTAGAGTTCCTGGGCATGATGGGCCTGTTCGGTTCCTTCTTCAGCGGCATCCAACTAGCCATCATGGAACACAAGGAGCTGTTGAAGGTGCAGTGGGACTGGCAGATAGGGTTACTGTACATCGGCTTTAGTGCCTGCATGTTTGGCCTGTACAGCTTCATGCCTGTGGTGATCAAAAGGACCAGCGCCACGACGGTCAACCTGTCTCTGCTCACTGCTGACCTGTACAGCCTCTTCTGCGGCCTCTTTCTATTTCAGTACAAGTTTTCAGCTCTCTACCTGCTGTCGTTCTTCATCATCTTGCTCGGCTTGGTGATCTACTCCTCCTCCTCGACCTATGTGGCGCAGGACCCCCGCGTTTATAAGCAGTTCCGTAACGCAGGAAATCCCATCCCGGACACGCCCAACGTCGGCCCCTTGGAGCCTTCAGTGACCTACAGCAGCCTGGGGCAGGAGATAGAGGACGAGCCTCGGGTTCGAGTAGCCTGAGGGGGCGGAGTCACATGCACGCAATCATCCACGGCCCCTCCCGCAGCGCGTAGAAAGTGAATGATGATAATCAGAGAATAATGTATATAACCACGTAGCAAACAAGTACACTGTGATCACGAACTGTGAATAGGTAGCAGTGATCTCGGACTGTCTCGGATCCATCGTGTATAAACCTCATCGCCTCCACACGCAGCAGTTTAAGTGTTTGAGGATCTGTGCTGACTGTTTGTGCAAAATCTCAATTGTgacttttattttcttacatGAGCACAAAAGGGTTCAGTGTATCTGAAATATTGACATGCATTTTTTGctatcattaatattttaaaggaacaaatcggccaaaaataaaatgtaagatataataattatataattttactcCGTACActaaatgtagtcaatcagctaAATTAGCATTCttaattttgcactggagcAACAAGGCTAACGTGGCTAACACTTAAGAAAGgtttatagctaccagtttaacACAATTCAAACTGCATGCCTGAATCATCACACAGTCACCTTAAAAACTCTGTGGAGCTGTTTATTGTCTTGTGCATGTGGTTTTTGACACTGTGTaacacacaaatatttcagaGCTGAAAACAGTCTCAGCTCCATCATGAAGCTGGAAGCTCATTTTCTTAATACAGACTGTTACTGTATAAAATTGTTTACATACAAATGGTGTAATTGATTCAGCTGATGTCCTCTGAGGTGCATGCAGTTGTGCTAAAATGGTGGCTATatgcttttataccacagcattgttgaattcctgaatctgattggtcagaacgtgtttattcattttgtgtaggagcagctctgacagtagtgctggctgcaaacACTGCTAA

Function

symbol description
slc35f1 Predicted to enable transmembrane transporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC35F1 (solute carrier family 35 member F1).

NR:

description
solute carrier family 35 member F1-like

GO: NA

KEGG:

id description
K15287 SLC35F1_2; solute carrier family 35, member F1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922908.2 True 2312 mRNA 0.48 8 16184253 16299085

Neighbor

gene id symbol gene type direction distance location
si:dkeyp-114g9.1 LOC108257881,LOC107603058 coding downstream 2331 16166429 ~ 16181922 (-)
trnav-cac_21 NA coding downstream 404954 15779227 ~ 15779299 (-)
trnad-guc_29 NA coding downstream 410073 15774109 ~ 15774180 (-)
trnav-cac_19 NA coding downstream 410291 15773890 ~ 15773962 (-)
trnad-guc_28 NA coding downstream 413370 15770812 ~ 15770883 (-)
nus1 nus1,LOC107549681,LOC107736830 coding upstream 14526 16313611 ~ 16326865 (-)
LOC113531921 LOC108257860 coding upstream 28496 16327581 ~ 16334071 (-)
dcbld1 dcbld1 coding upstream 63017 16362102 ~ 16398260 (-)
vgll2a vgll2,LOC107678819 coding upstream 121676 16420761 ~ 16428372 (-)
rfx6 rfx6,LOC102193265,LOC102778618 coding upstream 172357 16471442 ~ 16488569 (-)
G296734 NA non-coding downstream 18408 16157334 ~ 16165845 (-)
G296733 NA non-coding downstream 18965 16163491 ~ 16165288 (-)
G296731 NA non-coding downstream 28280 16152334 ~ 16155973 (-)
G296237 NA non-coding downstream 860843 15322991 ~ 15323410 (-)
G295909 NA non-coding downstream 1391504 14792540 ~ 14792749 (-)
LOC117599726 NA non-coding upstream 39997 16339082 ~ 16342070 (-)
G296823 NA non-coding upstream 292828 16591913 ~ 16592120 (-)
G296835 NA non-coding upstream 315455 16614540 ~ 16614771 (-)
G296965 NA non-coding upstream 442156 16741241 ~ 16807322 (-)
G296993 NA non-coding upstream 546030 16845115 ~ 16846008 (-)
pln NA other downstream 41637 16134134 ~ 16142616 (-)
G296263 cx32,LOC108257940,LOC108424424 other downstream 701892 15463081 ~ 15482361 (-)
pkib pkib other downstream 879956 15273854 ~ 15304297 (-)
pex7 pex7,LOC107727680,LOC107676274 other downstream 1412218 14726401 ~ 14772035 (-)
trnal-cag_15 NA other downstream 1587858 14596313 ~ 14596395 (-)
G296802 igf2r other upstream 256018 16555103 ~ 16557927 (-)
ttc32 ttc32 other upstream 744081 17043166 ~ 17046831 (-)
gtf2h5 gtf2h5,tf2h5,LOC107721375,LOC107659223 other upstream 934892 17233977 ~ 17236129 (-)
esr1 esr1 other upstream 1186499 17485584 ~ 17506658 (-)
acot20 LOC108257587,LOC108257591 other upstream 1408201 17707286 ~ 17715272 (-)

Expression


Co-expression Network