acot20 (LOC108257587,LOC108257591)


Basic Information

Item Value
gene id acot20
gene name LOC108257587,LOC108257591
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 17707286 ~ 17715272 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU352481
CAACCCGTGTCCAAAGGCACGACATGGCGCTGTACTTGAGAGCGAGAGAACTTTTCAGGATAAATGCACGGAAACTATGTTCTTctccttgttcttcttcttcttcttcttgtggAGTGCAGCTCCGCATCCTGCCGAGCAGCAGCTGTTTCTTTGATGAAGCAGTTCAGATTAAGTTGAGCGGTTTGAATCCTGGACAGCATGTGGAGCTCCGGGCCAAACACAAGGACGATAAAGGGGTTGTTTTCAAGGCCAGTGCTGCATACCAGGCAGACGCGCATGGAGAGGTGGATGTGAGCCGGCAGCCGTCCACGGGCGGCTCGTACACGGGGGTGGAGCCGATGGGCTTGTTCTGGTCCATGCTGCCAGAAAGCCCTCACAAGAAGCTGCTGAAGAGAGACGCGTCCAGCCCTGTGCTCATCCACATCGAGGCTCACAGAGACGGCCAGATCCTCACTGCAGAGACCAACACCAGGCGCTTCATGGCTGATGGAGTGCTCAGAGTCCCTGTAAGAGACGGCAGGTTGCGGGGGACTCTCTTCATCCCACCTGGTGAAGGTCCATTCCCTGGAATTATAGATCTGTATACGTTAGGAGGCACCGTGTGTGAGCCGCGAGCAGCTCTACTGGCAAACAAAGGCTTTGTGGTGTTTGCTCTGGCTTTCTACGGCTACCAGGACATGCCCAAAATGGTGGATAAACTCGATCTGGAGTACTTTGAGGAAGG
>XM_026923737.2
GGGGTGGGATTCACACAGAGGGATCTGGCAACCCGTGTCCAAAGGCACGACATGGCGCTGTACTTGAGAGCGAGAGAACTTTTCAGGATAAATGCACGGAAACTATGTTCTTctccttgttcttcttcttcttcttcttgtggAGTGCAGCTCCGCATCCTGCCGAGCAGCAGCTGTTTCTTTGATGAAGCAGTTCAGATTAAGTTGAGCGGTTTGAATCCTGGACAGCATGTGGAGCTCCGGGCCAAACACAAGGACGATAAAGGGGTTGTTTTCAAGGCCAGTGCTGCATACCAGGCAGACGCGCATGGAGAGGTGGATGTGAGCCGGCAGCCGTCCACGGGCGGCTCGTACACGGGGGTGGAGCCGATGGGCTTGTTCTGGTCCATGCTGCCAGAAAGCCCTCACAAGAAGCTGCTGAAGAGAGACGCGTCCAGCCCTGTGCTCATCCACATCGAGGCTCACAGAGACGGCCAGATCCTCACTGCAGAGACCAACACCAGGCGCTTCATGGCTGATGGAGTGCTCAGAGTCCCTGTAAGAGACGGCAGGTTGCGGGGGACTCTCTTCATCCCACCTGGTGAAGGTCCATTCCCTGGAATTATAGATCTGTATACGTTAGGAGGTACCGTGTGTGAGCCGCGAGCAGCTCTACTGGCAAACAAAGGCTTTGTGGTGTTTGCTCTGGCTTTCTACGGCTACCAGGACATGCCCAAAACGGTGGATAAACTCGATCTGGAGTACTTTGAGGAAGGTGTAACATTTCTGCAGATGCAGCCCAAGgtgAAAAAAACTGGAATAGGAATAATATCAATCTCAAAAAGTGGAGATCTGGCTTTGTCAATGGCCTCCTTCCTTCCCAACATATCAGCCACCGTCTGCATCAACACCTGCAACGCCAACGTCCTGTTCCCTCTCCATTATAAAGACGTGGTGATCCCAAGTTTCGTCGGCAGTACCAAAAGAATAAGAGTAACAAAATCTGGCATCTTGGATATCAGAGATATCCTGAATGACCCAATGGAAGAGGAGAAGGACCGTGCCACGGTCATCCCTATCGAGCGTGCCAGCTGTAGATTCTTGTTCATAGTGTCAGGAGATGACAGGAACTGGAACAGTTCCTTTTTTGCGGAGCAAGCTTGCAGCAGGCTCAAAGCACACGGAAAAGCAAACTACGACATGGTCAGTTATCCGACAGCAGGGCACTTTATGGAAGTCCCCTACATGCCCCATCACCCGTCTGGGCTCCACGCCGCCGTGAGTCAAGTGGTCACTTTTGGAGGAGAACCGAAAGCTCATGCACACGCACAGGTTGATGCTTGGAGGAGAGTTCAAGAGTTTCTCAAAACCCACTTGTGAAAACACTtactgaaatgtcattttaaatgtataacaaaaacacctcactatatgatacagtggatataagaagtccacacccctgttaaaatgcaggtttttgtgaaaaatgaaacgTAAGTGAAAAGATAAGTCATGTCATAACCTTTTCcgccctcagtgtgaaattacagcatataaaaattaagtggaaaaacaattagaaacattttagagtaaaatagaaaaaataaaaaaattacaataacctggttgcataagt
>XM_034313926.1
ataaacatttataaacatgacTAGCACCATACCCAACACTCATTGCCCAGCTCGAGTGCCAATACGTCATTTGTTGTGGGTCGCTAGAGGGACCTACCATTCAAGTCTCGTGACGATTGCTCATTCCTAACCCTATCAAAtccctgctgaaagctgattggctgatgacgGTCATGCTTGTCTTACACAAGACTACTACAGGTTAGCATAACGATGGAGAATTTCCCAAGTTTCAGCTTAATCAGGTTTACGGTTCCTGAAAAACCGTTTCCTGAACGTAACTCCGCCCCTATTGATGACCACACCCACAACTCAGCATACCTCCTCAGGACCTTGTCTCGAAGGGTCTGTCAAGATTCATTCAAGTccatataaatattcatgagtTACTGCTGGTTGAATGAATAAGGCTCCGCCCCATTAGAATTGATTGGCAGGAGGCGGCCATATTGATCATAAATCTTGACGTCTTTTGGACAAATATTGCAGGAGAAGCTCTCCTGAGCCATTTGACACCAACTTTTTGTGAAGATAGGACAAAAAAATCCTAGGATTAGTTCCCAAAGGGAGGTTTTtgatattatgcaaattagcaaataatctgagtgggcggagctaaatgGTCCAAATTGCATCTTGGTTCAGAATGAGCCAACAAATCCAGGGAAAAAGAATTTTGTCTCTAGGCTTTACAGATCTCAAGGTAAGGGCTAAAACGTAAAATGGCGAGTTATGCTGCACTGTAGCGCCACCATGAGGCCAGTTGTGCTCATCTTTCTTACCTGAGTAGGGGGAGGGATTCGCAACACACTAAACCAGAAGGTCAAGGTTCACGGATGAACTTTGATGTGGCTTGACCGAGCCTAAACATGTTAAGAGTGAAGGTCCATTCCCTGGAATTATAGATCTGTATACGTTAGGAGGTACCGTGTGTGAGCCGCGAGCAGCTCTACTGGCAAACAAAGGCTTTGTGGTGTTTGCTCTGGCTTTCTACGGCTACCAGGACATGCCCAAAACGGTGGATAAACTCGATCTGGAGTACTTTGAGGAAGGTGTAACATTTCTGCAGATGCAGCCCAAGgtgAAAAAAACTGGAATAGGAATAATATCAATCTCAAAAAGTGGAGATCTGGCTTTGTCAATGGCCTCCTTCCTTCCCAACATATCAGCCACCGTCTGCATCAACACCTGCAACGCCAACGTCCTGTTCCCTCTCCATTATAAAGACGTGGTGATCCCAAGTTTCGTCGGCAGTACCAAAAGAATAAGAGTAACAAAATCTGGCATCTTGGATATCAGAGATATCCTGAATGACCCAATGGAAGAGGAGAAGGACCGTGCCACGGTCATCCCTATCGAGCGTGCCAGCTGTAGATTCTTGTTCATAGTGTCAGGAGATGACAGGAACTGGAACAGTTCCTTTTTTGCGGAGCAAGCTTGCAGCAGGCTCAAAGCACACGGAAAAGCAAACTACGACATGGTCAGTTATCCGACAGCAGGGCACTTTATGGAAGTCCCCTACATGCCCCATCACCCGTCTGGGCTCCACGCCGCCGTGAGTCAAGTGGTCACTTTTGGAGGAGAACCGAAAGCTCATGCACACGCACAGGTTGATGCTTGGAGGAGAGTTCAAGAGTTTCTCAAAACCCACTTGTGAAAACACTtactgaaatgtcattttaaatgtataacaaaaacacctcactatatgatacagtggatataagaagtccacacccctgttaaaatgcaggtttttgtgaaaaatgaaacgTAAGTGAAAAGATAAGTCATGTCATAACCTTTTCcgccctcagtgtgaaattacagcatataaaaattaagtggaaaaacaattagaaacattttagagtaaaatagaaaaaataaaaaaattacaataacctggttgcataagt

Function

NR:

description
PREDICTED: acyl-coenzyme A thioesterase 1-like

GO: NA

KEGG:

id description
K01068 ACOT1_2_4; acyl-coenzyme A thioesterase 1/2/4

RNA

RNA id representative length rna type GC content exon number start site end site
TU352481 False 727 TUCP 0.54 2 17707286 17715244
XM_026923737.2 False 1621 mRNA 0.48 3 17710711 17715272
XM_034313926.1 True 1919 mRNA 0.44 3 17710711 17714397

Neighbor

gene id symbol gene type direction distance location
gpr176 gpr176,LOC102785786 coding downstream 7726 17683997 ~ 17699560 (-)
mthfd1l mthfd1l,si:ch211-266i18.6,LOC107721348,LOC107659212,LOC107665399 coding downstream 41158 17608591 ~ 17666128 (-)
akap12b akap12 coding downstream 106526 17538910 ~ 17600760 (-)
armt1 armt1 coding downstream 186575 17512447 ~ 17520711 (-)
myct1a myct1 coding downstream 447420 17256381 ~ 17259866 (-)
LOC113532304 LOC108257600 coding upstream 45347 17760619 ~ 17767511 (-)
LOC113531908 NA coding upstream 53272 17768544 ~ 17775954 (-)
fntb fntb,LOC108257588,LOC108424508,LOC107756604,LOC107668263,LOC107721314,LOC107671778,LOC106571088,LOC105024336 coding upstream 93026 17808298 ~ 17825400 (-)
zfyve1 zfyve1,LOC107721321 coding upstream 401278 18116550 ~ 18130493 (-)
rhov rhov,LOC107602886,LOC107721274,LOC107659156,LOC107668201,LOC107562688 coding upstream 451107 18166379 ~ 18169095 (-)
G297465 NA non-coding downstream 50475 17656225 ~ 17656811 (-)
G297442 NA non-coding downstream 224399 17482324 ~ 17482887 (-)
LOC113531886 NA non-coding downstream 285834 17415966 ~ 17421452 (-)
G297053 NA non-coding downstream 625172 17081872 ~ 17082114 (-)
G297052 NA non-coding downstream 640858 17065682 ~ 17066428 (-)
G297712 NA non-coding upstream 126289 17841561 ~ 17842853 (-)
G297718 NA non-coding upstream 139613 17854885 ~ 17953471 (-)
G297720 NA non-coding upstream 150016 17865288 ~ 17865651 (-)
G297724 NA non-coding upstream 159180 17874452 ~ 17874744 (-)
G297839 NA non-coding upstream 403896 18119168 ~ 18176606 (-)
esr1 esr1 other downstream 200628 17485584 ~ 17506658 (-)
gtf2h5 gtf2h5,tf2h5,LOC107721375,LOC107659223 other downstream 471157 17233977 ~ 17236129 (-)
ttc32 ttc32 other downstream 660455 17043166 ~ 17046831 (-)
G296802 igf2r other downstream 1149359 16555103 ~ 16557927 (-)
pln NA other downstream 1564670 16134134 ~ 16142616 (-)
dpf3 dpf3,LOC108257599,LOC108424513,LOC107659173,LOC107721322,LOC107668213,LOC107562702,LOC107602065,LOC107756570 other upstream 357273 18072545 ~ 18105993 (-)
ubr7 LOC108257828,LOC108411326 other upstream 1355188 19070460 ~ 19083511 (-)
LOC113525604 LOC108258223 other upstream 1659501 19374773 ~ 19410374 (-)
LOC113524711 NA other upstream 1713919 19429191 ~ 19451604 (-)
LOC113524722 NA other upstream 1756748 19472020 ~ 19473976 (-)

Expression


Co-expression Network