LOC113531908


Basic Information

Item Value
gene id LOC113531908
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 17768544 ~ 17775954 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922895.2
ATGGAGCTCACCTCTAACCAAACTGCTCTTCTTTCCTATGATCTGGATCTACAGAGCCAAAATAATTTCACCAATGTCACCTTGTCAAACATCTCTGTTTCTGCCTCTCTGGATCAGGCCATTAATGTGATCTGCATAATCATCATCTGTGACACGATGGCTGCTCTCGGCTGCACGATGGAGGTCTCCAAGATAAAGGCCCACATCAAAAAGCCCAAAAGCTTGATGATCCCCTTGGTGGCACAGTTTGGGGTGATGCCCCTCACAGCCTTCTCTCTGGCTAAACTGTTCCAGCTCGGTCCCAGTGCAGCCATGGCAGTGCTGGTTTGTGGCTGCTGTCCAGGGGGACTGCTTTCCAATATTTTGGCCTTAGCTGCTAAGGGGGACATGAATCTCAGCATTGTGATGACGACTTGCTCTACATTGGTGGCACTGGGTATGATACCTCTGCTGCTCTTCATTTACTGCCATGGCTTCTCCAACCTGAGTGCTGTGCCTTACGTTCGCATCATCCTGACCTTGATCTTGACTGTGCTGCCTTGCTCAATTGGCATCTATATCAGCTATCGCGTGCCAGAGAAGTCCAAACTTGTCATCAAGGTTGGGCTGGGCATAATGCTGGTTGGTTATATTGCTTTAGGTATTCTGCTCAGCATTGTAGTAGGACCCATCATGTGGGTGGTGACAGAACCTCGACTTGTGGCCACAGGAGCATTGATGCCACTTATTGGATATGTACTTGGCTATGTCCTGTCTTTTCTCTTCAGGTTTGATGAATCttttaCATTTTGCTGACCACAAGTCACTAATGCTGGGTTTAAACACA

Function

GO: NA

KEGG:

id description
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922895.2 True 826 mRNA 0.48 4 17768544 17775954

Neighbor

gene id symbol gene type direction distance location
LOC113532304 LOC108257600 coding downstream 1033 17760619 ~ 17767511 (-)
gpr176 gpr176,LOC102785786 coding downstream 68984 17683997 ~ 17699560 (-)
mthfd1l mthfd1l,si:ch211-266i18.6,LOC107721348,LOC107659212,LOC107665399 coding downstream 102416 17608591 ~ 17666128 (-)
akap12b akap12 coding downstream 167784 17538910 ~ 17600760 (-)
armt1 armt1 coding downstream 247833 17512447 ~ 17520711 (-)
fntb fntb,LOC108257588,LOC108424508,LOC107756604,LOC107668263,LOC107721314,LOC107671778,LOC106571088,LOC105024336 coding upstream 32344 17808298 ~ 17825400 (-)
zfyve1 zfyve1,LOC107721321 coding upstream 340596 18116550 ~ 18130493 (-)
rhov rhov,LOC107602886,LOC107721274,LOC107659156,LOC107668201,LOC107562688 coding upstream 390425 18166379 ~ 18169095 (-)
chac1 chac1,LOC107721326,LOC107739370 coding upstream 474318 18250272 ~ 18252460 (-)
dll4 dll4,LOC107562694,LOC107739369,LOC107721368,LOC107602157,LOC107668208 coding upstream 496122 18272076 ~ 18282680 (-)
G297670 NA non-coding downstream 8134 17705600 ~ 17760410 (-)
G297465 NA non-coding downstream 111733 17656225 ~ 17656811 (-)
G297442 NA non-coding downstream 285657 17482324 ~ 17482887 (-)
LOC113531886 NA non-coding downstream 347092 17415966 ~ 17421452 (-)
G297053 NA non-coding downstream 686430 17081872 ~ 17082114 (-)
G297712 NA non-coding upstream 65607 17841561 ~ 17842853 (-)
G297718 NA non-coding upstream 78931 17854885 ~ 17953471 (-)
G297720 NA non-coding upstream 89334 17865288 ~ 17865651 (-)
G297724 NA non-coding upstream 98498 17874452 ~ 17874744 (-)
G297839 NA non-coding upstream 343214 18119168 ~ 18176606 (-)
acot20 LOC108257587,LOC108257591 other downstream 53272 17707286 ~ 17715272 (-)
esr1 esr1 other downstream 261886 17485584 ~ 17506658 (-)
gtf2h5 gtf2h5,tf2h5,LOC107721375,LOC107659223 other downstream 532415 17233977 ~ 17236129 (-)
ttc32 ttc32 other downstream 721713 17043166 ~ 17046831 (-)
G296802 igf2r other downstream 1210617 16555103 ~ 16557927 (-)
dpf3 dpf3,LOC108257599,LOC108424513,LOC107659173,LOC107721322,LOC107668213,LOC107562702,LOC107602065,LOC107756570 other upstream 296591 18072545 ~ 18105993 (-)
ubr7 LOC108257828,LOC108411326 other upstream 1294506 19070460 ~ 19083511 (-)
LOC113525604 LOC108258223 other upstream 1598819 19374773 ~ 19410374 (-)
LOC113524711 NA other upstream 1653237 19429191 ~ 19451604 (-)
LOC113524722 NA other upstream 1696066 19472020 ~ 19473976 (-)

Expression


Co-expression Network