G297839


Basic Information

Item Value
gene id G297839
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 18119168 ~ 18176606 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU352672
gtcaatatttggtgtaacAATCCCTTgcttcttgttttttgtttttttaaaacagtatctgaggtgcagtgtgtgcagttttataaggaaatgagctggaagtgttactgagcatcttgcagaagcagccacagttcttctggagactttgactgtcgactcgcttcttatttctgcagcgaaacccagcagccttcattatgtttttatctgaaaagtgtctcttatggaatctgctgctttctttactgacatacaaacatttttctgtaacgtttcattttgtgctggaaaacgtatgattggaatctaaaatgtttttgtactgaatcaataatgtagaatcataaaataaacatctataacaaagtttgtactaaagaaagacttaagacttttgcacagtactatatatatacacacacacacacacacacacagtatatatgttCGGCCCTTGGGTATTGTGATGAGGTCTAATGTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU352672 True 485 lncRNA 0.36 2 18119168 18176606

Neighbor

gene id symbol gene type direction distance location
fntb fntb,LOC108257588,LOC108424508,LOC107756604,LOC107668263,LOC107721314,LOC107671778,LOC106571088,LOC105024336 coding downstream 293768 17808298 ~ 17825400 (-)
LOC113531908 NA coding downstream 343214 17768544 ~ 17775954 (-)
LOC113532304 LOC108257600 coding downstream 351657 17760619 ~ 17767511 (-)
gpr176 gpr176,LOC102785786 coding downstream 419608 17683997 ~ 17699560 (-)
mthfd1l mthfd1l,si:ch211-266i18.6,LOC107721348,LOC107659212,LOC107665399 coding downstream 453040 17608591 ~ 17666128 (-)
chac1 chac1,LOC107721326,LOC107739370 coding upstream 73666 18250272 ~ 18252460 (-)
dll4 dll4,LOC107562694,LOC107739369,LOC107721368,LOC107602157,LOC107668208 coding upstream 95470 18272076 ~ 18282680 (-)
vrtn vrtn coding upstream 399364 18575970 ~ 18580206 (-)
zbtb1 zbtb1,LOC107711663,LOC107562689,LOC107721384,LOC107659184,LOC107668253,LOC107602161 coding upstream 429915 18606521 ~ 18615280 (-)
si:dkey-1h6.8 NA coding upstream 450770 18627376 ~ 18633161 (-)
G297718 NA non-coding downstream 165697 17854885 ~ 17953471 (-)
G297724 NA non-coding downstream 244424 17874452 ~ 17874744 (-)
G297720 NA non-coding downstream 253517 17865288 ~ 17865651 (-)
G297712 NA non-coding downstream 276315 17841561 ~ 17842853 (-)
G297670 NA non-coding downstream 358758 17705600 ~ 17760410 (-)
G297887 NA non-coding upstream 58272 18234878 ~ 18235510 (-)
G297900 NA non-coding upstream 76756 18253362 ~ 18253562 (-)
LOC117599783 NA non-coding upstream 195075 18371681 ~ 18426148 (-)
G297954 NA non-coding upstream 333881 18510487 ~ 18510709 (-)
G297960 NA non-coding upstream 355072 18531678 ~ 18532840 (-)
dpf3 dpf3,LOC108257599,LOC108424513,LOC107659173,LOC107721322,LOC107668213,LOC107562702,LOC107602065,LOC107756570 other downstream 13175 18072545 ~ 18105993 (-)
acot20 LOC108257587,LOC108257591 other downstream 403896 17707286 ~ 17715272 (-)
esr1 esr1 other downstream 612510 17485584 ~ 17506658 (-)
gtf2h5 gtf2h5,tf2h5,LOC107721375,LOC107659223 other downstream 883039 17233977 ~ 17236129 (-)
ttc32 ttc32 other downstream 1072337 17043166 ~ 17046831 (-)
ubr7 LOC108257828,LOC108411326 other upstream 893854 19070460 ~ 19083511 (-)
LOC113525604 LOC108258223 other upstream 1198167 19374773 ~ 19410374 (-)
LOC113524711 NA other upstream 1252585 19429191 ~ 19451604 (-)
LOC113524722 NA other upstream 1295414 19472020 ~ 19473976 (-)
G298475 NA other upstream 1414353 19590959 ~ 19591437 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G442432 NA non-coding CI01000311 null 1092169 ~ 1092418 (+)