trnav-cac_21


Basic Information

Item Value
gene id trnav-cac_21
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 15779227 ~ 15779299 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnav-cac_21
gtttctgtagtgtagtggttatcacGTTCGCCTCACACGCGAAAGGTCCCCGGTTCGAAACCGGGCAGAAACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnav-cac_21 True 73 tRNA 0.53 1 15779227 15779299

Neighbor

gene id symbol gene type direction distance location
trnad-guc_29 NA coding downstream 5047 15774109 ~ 15774180 (-)
trnav-cac_19 NA coding downstream 5265 15773890 ~ 15773962 (-)
trnad-guc_28 NA coding downstream 8344 15770812 ~ 15770883 (-)
trnav-cac_17 NA coding downstream 8562 15770593 ~ 15770665 (-)
trnav-cac_16 NA coding downstream 9838 15769317 ~ 15769389 (-)
si:dkeyp-114g9.1 LOC108257881,LOC107603058 coding upstream 387130 16166429 ~ 16181922 (-)
slc35f1 slc35f1,LOC107678858,LOC107727669,LOC107697151,LOC107743307,LOC106571386 coding upstream 404954 16184253 ~ 16299085 (-)
nus1 nus1,LOC107549681,LOC107736830 coding upstream 534312 16313611 ~ 16326865 (-)
LOC113531921 LOC108257860 coding upstream 548282 16327581 ~ 16334071 (-)
dcbld1 dcbld1 coding upstream 582803 16362102 ~ 16398260 (-)
G296237 NA non-coding downstream 455817 15322991 ~ 15323410 (-)
G295909 NA non-coding downstream 986478 14792540 ~ 14792749 (-)
G295836 NA non-coding downstream 1090591 14688358 ~ 14688636 (-)
G295828 NA non-coding downstream 1108917 14670101 ~ 14670310 (-)
G295827 NA non-coding downstream 1109502 14669508 ~ 14669725 (-)
G296731 NA non-coding upstream 373035 16152334 ~ 16155973 (-)
G296734 NA non-coding upstream 378035 16157334 ~ 16165845 (-)
G296733 NA non-coding upstream 384192 16163491 ~ 16165288 (-)
LOC117599726 NA non-coding upstream 559783 16339082 ~ 16342070 (-)
G296823 NA non-coding upstream 812614 16591913 ~ 16592120 (-)
G296263 cx32,LOC108257940,LOC108424424 other downstream 296866 15463081 ~ 15482361 (-)
pkib pkib other downstream 474930 15273854 ~ 15304297 (-)
pex7 pex7,LOC107727680,LOC107676274 other downstream 1007192 14726401 ~ 14772035 (-)
trnal-cag_15 NA other downstream 1182832 14596313 ~ 14596395 (-)
trnal-cag_14 NA other downstream 1184596 14594549 ~ 14594631 (-)
pln NA other upstream 354835 16134134 ~ 16142616 (-)
G296802 igf2r other upstream 775804 16555103 ~ 16557927 (-)
ttc32 ttc32 other upstream 1263867 17043166 ~ 17046831 (-)
gtf2h5 gtf2h5,tf2h5,LOC107721375,LOC107659223 other upstream 1454678 17233977 ~ 17236129 (-)
esr1 esr1 other upstream 1706285 17485584 ~ 17506658 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) trnav-cac-75 NA coding NC_048572.1 CM023226.2 52711090 ~ 52711162 (-)