G295827


Basic Information

Item Value
gene id G295827
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 14669508 ~ 14669725 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU350364
tcctgtctccaccctgtcttgtcattggtcTCTTAActactgtgttcacctgtttggAGATTGTCCTTTTTTAGCTTATGTATACCCTGTTGTTTCAATGTAATGTGGTGAAGTCGTATCGTCCATTTGTACTGTTAAGTATGAGCTTTATTGTCtgtacttcctggttttaaCCCTTGCCTGTTCCCCTTGGATCTGAATATGGATCATCCTTGTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU350364 True 218 lncRNA 0.40 1 14669508 14669725

Neighbor

gene id symbol gene type direction distance location
clu clu coding downstream 37242 14621857 ~ 14632266 (-)
bcl11bb LOC108258024,LOC108426327,LOC103027528 coding downstream 81252 14557104 ~ 14588256 (-)
lgals8a LOC108258055 coding downstream 313956 14345091 ~ 14355552 (-)
tmem242 tmem242,LOC107679673,LOC107555301 coding downstream 359243 14305201 ~ 14310265 (-)
trnaa-agc_14 NA coding downstream 543522 14125914 ~ 14125986 (-)
LOC113532135 NA coding upstream 12457 14682182 ~ 14686085 (-)
ccdc25 ccdc25,LOC107675065 coding upstream 20439 14690164 ~ 14696661 (-)
pbk pbk,LOC107598104,LOC107717112,LOC107727585,LOC107676230,LOC107602197 coding upstream 38335 14708060 ~ 14713903 (-)
LOC113532199 slc35d3 coding upstream 48114 14717839 ~ 14725117 (-)
hey2 hey2,LOC107717129,LOC107727582,LOC106571366 coding upstream 107352 14777077 ~ 14785071 (-)
G295783 NA non-coding downstream 73096 14594416 ~ 14596412 (-)
G295753 NA non-coding downstream 151016 14518274 ~ 14518492 (-)
G295708 NA non-coding downstream 272123 14397147 ~ 14397385 (-)
trnas-gcu_18 NA non-coding downstream 272507 14396920 ~ 14397001 (-)
trnas-gcu_17 NA non-coding downstream 273320 14396107 ~ 14396188 (-)
G295828 NA non-coding upstream 376 14670101 ~ 14670310 (-)
G295836 NA non-coding upstream 18633 14688358 ~ 14688636 (-)
G295909 NA non-coding upstream 122815 14792540 ~ 14792749 (-)
G296237 NA non-coding upstream 653266 15322991 ~ 15323410 (-)
G296731 NA non-coding upstream 1482609 16152334 ~ 16155973 (-)
trnal-cag_15 NA other downstream 73113 14596313 ~ 14596395 (-)
trnal-cag_14 NA other downstream 74877 14594549 ~ 14594631 (-)
trnal-cag_13 NA other downstream 75515 14593911 ~ 14593993 (-)
trnal-cag_12 NA other downstream 77033 14592135 ~ 14592475 (-)
trnas-gcu_15 NA other downstream 282812 14386615 ~ 14386696 (-)
pex7 pex7,LOC107727680,LOC107676274 other upstream 56676 14726401 ~ 14772035 (-)
pkib pkib other upstream 604129 15273854 ~ 15304297 (-)
G296263 cx32,LOC108257940,LOC108424424 other upstream 793356 15463081 ~ 15482361 (-)
pln NA other upstream 1464409 16134134 ~ 16142616 (-)
G296802 igf2r other upstream 1885378 16555103 ~ 16557927 (-)

Expression


Co-expression Network