RNA id: trnav-cac_21


Basic Information

Item Value
RNA id trnav-cac_21
length 73
RNA type tRNA
GC content 0.53
exon number 1
gene id trnav-cac_21
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 15779227 ~ 15779299 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtttctgtagtgtagtggttatcacGTTCGCCTCACACGCGAAAGGTCCCCGGTTCGAAACCGGGCAGAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU350834 lncRNA downstream 455817 15322991 ~ 15323410 (-) True G296237
TU350466 lncRNA downstream 986478 14792540 ~ 14792749 (-) True G295909
TU350460 lncRNA downstream 1052377 14726401 ~ 14726850 (-) False pex7
TU350374 lncRNA downstream 1090591 14688358 ~ 14688636 (-) True G295836
TU350365 lncRNA downstream 1108917 14670101 ~ 14670310 (-) True G295828
TU351347 lncRNA upstream 354835 16134134 ~ 16142616 (-) False pln
TU351348 lncRNA upstream 354835 16134134 ~ 16142616 (-) False pln
TU351350 lncRNA upstream 354835 16134134 ~ 16142616 (-) False pln
TU351351 lncRNA upstream 354835 16134134 ~ 16142616 (-) True pln
TU351364 lncRNA upstream 373035 16152334 ~ 16155973 (-) True G296731
XM_026923258.2 mRNA downstream 272512 15504864 ~ 15506715 (-) True hsdl1
XM_026923277.2 mRNA downstream 274995 15500285 ~ 15504232 (-) True cx34.5
XM_026923276.2 mRNA downstream 275034 15500285 ~ 15504193 (-) False cx34.5
XM_026922585.2 mRNA downstream 280073 15496878 ~ 15499154 (-) True cx32.3
XM_026923494.2 mRNA downstream 285910 15491345 ~ 15493317 (-) True LOC113532227
XM_026922822.2 mRNA upstream 354868 16134167 ~ 16142604 (-) False pln
XM_026922782.2 mRNA upstream 387130 16166429 ~ 16181922 (-) True si:dkeyp-114g9.1
XM_026922908.2 mRNA upstream 404954 16184253 ~ 16299085 (-) True slc35f1
XM_034313953.1 mRNA upstream 534312 16313611 ~ 16326865 (-) True nus1
XM_034313852.1 mRNA upstream 548282 16327581 ~ 16334071 (-) True LOC113531921
trnad-guc_29 other downstream 5047 15774109 ~ 15774180 (-) True trnad-guc_29
trnav-cac_19 other downstream 5265 15773890 ~ 15773962 (-) True trnav-cac_19
trnad-guc_28 other downstream 8344 15770812 ~ 15770883 (-) True trnad-guc_28
trnav-cac_17 other downstream 8562 15770593 ~ 15770665 (-) True trnav-cac_17
trnav-cac_16 other downstream 9838 15769317 ~ 15769389 (-) True trnav-cac_16
XR_003403300.2 other upstream 354868 16134167 ~ 16142604 (-) False pln
trnal-cag_16 other upstream 727532 16506831 ~ 16506913 (-) True trnal-cag_16
TU351456 other upstream 775804 16555103 ~ 16557927 (-) False G296802
TU351457 other upstream 776177 16555476 ~ 16557927 (-) True G296802
TU351727 other upstream 1264014 17043313 ~ 17046810 (-) False ttc32

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) trnav-cac-75 True 73 mRNA 0.55 1 NC_048572.1 52711090 ~ 52711162 (-)