RNA id: XM_034313953.1


Basic Information

Item Value
RNA id XM_034313953.1
length 2489
RNA type mRNA
GC content 0.48
exon number 5
gene id nus1
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 16313611 ~ 16326865 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aCACGTAACTCGggagtgtaaagtgtaaaggtTAACAAGATGGCGGCCGGCAGTTTGAGGTGTTGGCAGTAATCGAATGGCTTGTTACCGGCTCGATTAACGCTCGCTGTTTAAATAAACACGGACGTTAGCGATGCGGGCTTGTTTGAGTCCCTGACAAACTCGAAATCTAATTAGGAGATTTTaaactgttattattgttattattatttttaatttaattatggCGTTAGTGTATGAGTTGGTATGGCGAGTTTTGCACGTCCTCCTCCAGCTTCAGCGCGCGGCGGTGTCCTGGTTCCAGGCGCGCGCATGGAAGCGCACCTGGCTGCTATGGAGACGAGCCGCGGCTGCTGTGCTGCTCCCGCTAGCGCTCGGCTTTGCTAACCAGAAGAAGCTCGGAGCCGCGGCGGGGAAGCGACCGAGCCGCCGGTGTCGGCTGCTGACGGACGGGAAGGCTTTGGAGAAGCTGCCGCTGCACGTCGGGCTGCTGGTCGCGGAGGAGGAGGCGCATTACACCGACATGGCTaatgtggtggtgtggtgtATGGCGCTCGGCATCTCTTATGTCAGCGTGTATGATAACGAAGGTGTGTTCAGGAGGAACAACTCCAGACTGATGGAGGAGATTGTGAAGCAGCAGAAGGAGCTCCTGGGCTCGGAAAGCTGCAAATACTCGGCAGAGTTCCTGAATAAtggcacagacacacaggaacAAGtgtcatGGTGTCAGACGGTGGTAAAGGTCTTGTCTCCAGACGACGGGAAGCTCAGTATCGTGCGAGCGGCGCAGCAGCTGTGTAAGGCCGTAGAGCAGAAAGAGAGCACATCCAAAGACATCAACGTCACTGTGCTGGACTCCTTACTGCGGGAGTCAAAGAACATCCCAGACCCCGAGCTGGTGCTGAAGTTCGGCCCAGTGGAGAGTACACTCGGCTTCCTGCCCTGGCACATCAGACTAACGGAGTTCATCTCTTTGCCTTCCCACAAAGACGTCTCTTACGACGACTTCCTCTGCGCTCTTCGGCGTTACGCGTCCTGCGAGCAGCGACTGGGGAAGTGAGCGAGTCCTCCAAAAAACCTGAACTGAAGGAATCCATGCGAGAGacgtcctctctctctctctctctatgtttaCAAAACACGCAGCTGAGCATCAGCATCCCGACGCCGCATCAGCATCTCTCCTTCACAACACACACGGCCCGGTTCTGACCCTGTACACCAAGGCtctgtgtgagtgaatgagtaaatACGTGtaactgtaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagcctGCCCTGCTGCTGCGTGTACACGGAGCAGAACTTCCATTCATCCGTGAGCGGCTCCAGAGACACGGTTAGCAATATGGTGTAGATTTCAGCGTCACACTTCATCCCATTTTGTCCTCTTGGTGTGTGTGGAAGCGCTGTAGCGTGGGCCGCTGAGTCAGCCAGCACTGTGCACTGAGGAAAAGGAACATTACGACGGGAAAACCAGTCATCCATCACAACATCTCGGCAGCATGCATCACAAGGAAACTCATTAATGACTTAGCAATGATCTAATGCAGTTGGAATGAATCGTGAACAGTACGAGCATGTGGACCTGAGGGAGCATgtgaaatgtgttaaatgtaaacgtgtgtgtgggggtgtgcgtgcgtgcgtgtgtgtgtgcgcgtttaGGCCACTgattgtactgaaaaaaaaacttgacttTGATTTACAATTGATACAAAATTGTTTATGATCATATGctgtattgttgttttttttttttttttttgccaatcaGTCACATTTTCAGGCTAATGCTCCGTCCAACAGTTTACTTCTTAAATAAGAaatcatttttccttctttcctttttttttttttttttttaatatataaattaagtaCATGTCTATTAGGTGTGGGTGATATGGCaaaaatgtatgatgtataTACCGAAGTTAAAGTAGGAACACTATCCAAACccccaccccaaaaaaaaaaaacagcacccCAGTATGAGAGACTGAAAGTCAAATGTTTTTTCAAAAtgactgatatttaaaaaacataacaagctgaaacatttttaacatccaGACTCGTTACTGTAAGTAACCCTAGAGTTCGTTGTTGTAAAAGTACTCACGTTCTTCACAACACTCTCGCACTGTCATATCGCCCACTCCTAATCTGCAAATCTGAGAGACAAATCCGAAGATGTGTACGTGAATGTGGATCAGCTGCGTTGTGGAGAGACACTGCACTGAATTTTACACCGTAATGCTAACCTCAGAGGCTCGCAGACGACGAGTGTCTTGCCATTTGTCGGAAGTCTTAAACCGAGCAGTGTATTTATTAGTCATGGCTCATCGTATAAGAGGGTTGATGTAATAGTGTCCAGTGTCCAGTGCGAATGCTTAATAAATGTTACTGAAAACCTGAA

Function

GO:

id name namespace
GO:0002040 sprouting angiogenesis biological_process
GO:0006486 protein glycosylation biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups molecular_function

KEGG:

id description
K19177 NUS1; dehydrodolichyl diphosphate syntase complex subunit NUS1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU351367 lncRNA downstream 147766 16157334 ~ 16165845 (-) True G296734
TU351366 lncRNA downstream 148323 16163491 ~ 16165288 (-) True G296733
TU351364 lncRNA downstream 157638 16152334 ~ 16155973 (-) True G296731
TU351348 lncRNA downstream 170995 16134134 ~ 16142616 (-) False pln
XR_004580104.1 lncRNA upstream 12217 16339082 ~ 16342070 (-) True LOC117599726
TU351480 lncRNA upstream 265048 16591913 ~ 16592120 (-) True G296823
TU351493 lncRNA upstream 287675 16614540 ~ 16614771 (-) True G296835
TU351652 lncRNA upstream 414376 16741241 ~ 16807322 (-) True G296965
TU351686 lncRNA upstream 518250 16845115 ~ 16846008 (-) True G296993
XM_026922908.2 mRNA downstream 14526 16184253 ~ 16299085 (-) True slc35f1
XM_026922782.2 mRNA downstream 131689 16166429 ~ 16181922 (-) True si:dkeyp-114g9.1
XM_026922822.2 mRNA downstream 171007 16134167 ~ 16142604 (-) False pln
XM_026923258.2 mRNA downstream 806896 15504864 ~ 15506715 (-) True hsdl1
XM_026923277.2 mRNA downstream 809379 15500285 ~ 15504232 (-) True cx34.5
XM_034313852.1 mRNA upstream 716 16327581 ~ 16334071 (-) True LOC113531921
XM_026923612.2 mRNA upstream 35237 16362102 ~ 16398260 (-) True dcbld1
XM_026923501.2 mRNA upstream 93896 16420761 ~ 16428372 (-) False vgll2a
XM_026923500.2 mRNA upstream 93896 16420761 ~ 16428371 (-) True vgll2a
XM_034313841.1 mRNA upstream 144577 16471442 ~ 16488569 (-) True rfx6
XR_003403300.2 other downstream 171007 16134167 ~ 16142604 (-) False pln
trnav-cac_21 other downstream 534312 15779227 ~ 15779299 (-) True trnav-cac_21
trnad-guc_29 other downstream 539431 15774109 ~ 15774180 (-) True trnad-guc_29
trnav-cac_19 other downstream 539649 15773890 ~ 15773962 (-) True trnav-cac_19
trnad-guc_28 other downstream 542728 15770812 ~ 15770883 (-) True trnad-guc_28
trnal-cag_16 other upstream 179966 16506831 ~ 16506913 (-) True trnal-cag_16
TU351456 other upstream 228238 16555103 ~ 16557927 (-) False G296802
TU351457 other upstream 228611 16555476 ~ 16557927 (-) True G296802
TU351727 other upstream 716448 17043313 ~ 17046810 (-) False ttc32
TU352481 other upstream 1380421 17707286 ~ 17715244 (-) False acot20

Expression Profile