RNA id: XR_004580104.1


Basic Information

Item Value
RNA id XR_004580104.1
length 862
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id LOC117599726
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 16339082 ~ 16342070 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GATCTAGCCTGACAGGATTACTAAGTGGATTTCAAGAAGCCATAATTCATAAACATGCTAAAGCACATTCCGTCAAACTGGAAGTACAAATGAACGAACTGGGATTTAATGCTTGGGCATTAACCCCGATAGCTGTCCGTGTTGGCTCGTGATCCCGGTTCTAATAAACAGGCCGAGAGTGAAGACACCATAACTTGGGTGAGACGACATCTATGGACCAGTCGACGAGGAACAGTGTTTGTGAACCAAAGTCAAGGATCAGCATTTGAGAACCAAGGCTCAGGACCAGCATTCTAGGACAAGCATTCAAGAACCAAGGTGAAGGATGAGTGTTCATAAATCAGCGTTTGAACCCAAGGACCGGACCAGCATTTGAGACTTAAGGCTGAGGACCAGGGTTCTAGGACCAGCATTCGAGGCCCAATGCCGAAGGCCAACATTCACGAACCCGTGTTCGAGAACCAAGGCAGAGGACCAGCTTTCAAAAACCTGTGTTTCAGACCCAAAGCCAAGAACCAGGGTTTGAGAACCAAAGCAGAGGACCATCATTTGAGGCAGtttctgttgtttctgtgtgtatttatgttttttacatatattcaggccctgtgtttgtgttaaactGTGACTAGGCCTACTGCCTTACTGGCCTGAATAACTCATCACTATAAAGCATTTTTAGTTTCTTAATAATTCAAACACCACCTGCTATGTTTTTGTATGATAACCATAGCAATGATGCAAATCATTGTGGACAAAAGTTAGTGTATAAAAAATTcttgtgtaatggtgtgtgagATAAGATGGATGAGTTTGGGACTGGAAAAGAACAGAGCATGTTTACATAGTCAACTCCAgcaac

Function

GO: NA

KEGG:

id description
ko03460 Fanconi anemia pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU351367 lncRNA downstream 173237 16157334 ~ 16165845 (-) True G296734
TU351366 lncRNA downstream 173794 16163491 ~ 16165288 (-) True G296733
TU351364 lncRNA downstream 183109 16152334 ~ 16155973 (-) True G296731
TU351347 lncRNA downstream 196466 16134134 ~ 16142616 (-) False pln
TU351480 lncRNA upstream 249843 16591913 ~ 16592120 (-) True G296823
TU351493 lncRNA upstream 272470 16614540 ~ 16614771 (-) True G296835
TU351652 lncRNA upstream 399171 16741241 ~ 16807322 (-) True G296965
TU351686 lncRNA upstream 503045 16845115 ~ 16846008 (-) True G296993
TU351687 lncRNA upstream 504051 16846121 ~ 16847214 (-) True G296994
XM_034313852.1 mRNA downstream 5011 16327581 ~ 16334071 (-) True LOC113531921
XM_034313953.1 mRNA downstream 12217 16313611 ~ 16326865 (-) True nus1
XM_026922908.2 mRNA downstream 39997 16184253 ~ 16299085 (-) True slc35f1
XM_026922782.2 mRNA downstream 157160 16166429 ~ 16181922 (-) True si:dkeyp-114g9.1
XM_026922822.2 mRNA downstream 196478 16134167 ~ 16142604 (-) False pln
XM_026923612.2 mRNA upstream 20032 16362102 ~ 16398260 (-) True dcbld1
XM_026923501.2 mRNA upstream 78691 16420761 ~ 16428372 (-) False vgll2a
XM_026923500.2 mRNA upstream 78691 16420761 ~ 16428371 (-) True vgll2a
XM_034313841.1 mRNA upstream 129372 16471442 ~ 16488569 (-) True rfx6
XM_034313842.1 mRNA upstream 129372 16471442 ~ 16486241 (-) False rfx6
XR_003403300.2 other downstream 196478 16134167 ~ 16142604 (-) False pln
trnav-cac_21 other downstream 559783 15779227 ~ 15779299 (-) True trnav-cac_21
trnad-guc_29 other downstream 564902 15774109 ~ 15774180 (-) True trnad-guc_29
trnav-cac_19 other downstream 565120 15773890 ~ 15773962 (-) True trnav-cac_19
trnad-guc_28 other downstream 568199 15770812 ~ 15770883 (-) True trnad-guc_28
trnal-cag_16 other upstream 164761 16506831 ~ 16506913 (-) True trnal-cag_16
TU351456 other upstream 213033 16555103 ~ 16557927 (-) False G296802
TU351457 other upstream 213406 16555476 ~ 16557927 (-) True G296802
TU351727 other upstream 701243 17043313 ~ 17046810 (-) False ttc32
TU352481 other upstream 1365216 17707286 ~ 17715244 (-) False acot20

Expression Profile