RNA id: TU351652


Basic Information

Item Value
RNA id TU351652
length 1542
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G296965
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 16741241 ~ 16807322 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

taaaatctgaatttatttatgatttacaaAAGCCTAACATGTAACaaccattaaaatgaaatcaaataaacTCTTCCTGAACCTAAAGTGATAAACGTATGAGTGTGTATACATGTCAGTTTACATTTCTGAAGCAGAAATAAAAGGTGAAGGAATATTGACACTATAGTGTTATGTATTGGTTCAATTTACAAAGTTTGTGtattcttggaaaaaaaaataatttacacataCACCAGCAAGTCCAGAGTGTCAATGGAGATATACAACCACATGTTCAACTTTAACTCCAATACTGTGGTCAAGGGAAATGGAGCTAAATTCAGAATGACGTTATAACATCAGGGCTGGTCTGAAAATGatagaagaaaggaaaaaaataaaagatgaaataatCCTTTTTGCTTTTCGTTAATCAATTTCCAACTCGCGTGGCCCTGACTTCTAGTTAACCGTTACAATGTTCAAATAAATACCTGCAAAAGCAAGGCTTCTGTATTCGTCTCTTTTCCTTTCACTTCTTCACTGACATCACGTCTTTAACCTCAGCTGAACTAACACACATCCGTTCAGTTCACTTCAATTAAATCACATccttttcataataataaaaaactaaaagtgGGAAAATAGAAAACTATTATAATAGAAACtattataatagaaaaatataaaactgaaaCTTTCGCTCTCTCTGGaattataatataaacacaaaccTCCTCTTCTCGATCCTGAAGCCAGAGGAAGACCGACGTTCAACGAGATTCATGAACTCTGCCTAAGTGTTAAAACGTTTACAGGGACACACCAAAAAGTCCGACCGTGTAAGTGAACAAACGGGCGAATGATCTGGAACGACCTCGCTCTCTTACATGTCTGTACTGGGAGACAGGAAACTGGTCCAAATCAGAAATGTCCAGAAATGTccagaaaaggggaaaaaaaaaaaaaagaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaaaagtgtcaCTTGATATGCTCCCAAacccaattccaatcttttccatttgttacaggatcagctcagattctttcttttatttctcagaCATCTGATCCACCATTTCTTGCTGGTATTAGACTGATACTGATCCCGAGTATCGCATCAGTCCCAGCTCTAACTTCTTCCAAAAGAATTTTCCATCATTTTGAGCGAAACTCCACACTTTTCCAGAAACGTGTGTAACGCTAACGAAACACACAAGTCATGAGGTAGACGTGAAACCATACAACAGcctgacaaacacacaatgcacagaaatttcaacacacacacacacacacacacacacacacacacacagttttacgATGGTGAAATCACTAAAATAAGACGTTTTATTCACACAAAGCTGATTTCCACTCACCAGTGCTGTGCTGTGCTCCTCTGAGCCTGCATACACTGAGACCAGTTCGTCCAGGACTTTATACATAACTACactcaactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcctgcctCCAGCAAACACACTGCAGTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU351493 lncRNA downstream 126470 16614540 ~ 16614771 (-) True G296835
TU351480 lncRNA downstream 149121 16591913 ~ 16592120 (-) True G296823
XR_004580104.1 lncRNA downstream 399171 16339082 ~ 16342070 (-) True LOC117599726
TU351367 lncRNA downstream 575396 16157334 ~ 16165845 (-) True G296734
TU351366 lncRNA downstream 575953 16163491 ~ 16165288 (-) True G296733
TU351686 lncRNA upstream 37793 16845115 ~ 16846008 (-) True G296993
TU351687 lncRNA upstream 38799 16846121 ~ 16847214 (-) True G296994
TU351706 lncRNA upstream 72074 16879396 ~ 16881821 (-) False G297011
TU351709 lncRNA upstream 72074 16879396 ~ 16881821 (-) True G297011
TU351744 lncRNA upstream 241452 17048774 ~ 17048993 (-) True G297044
XM_034313471.1 mRNA downstream 96484 16625619 ~ 16644757 (-) True LOC113531776
XM_026922675.2 mRNA downstream 96737 16625619 ~ 16644504 (-) False LOC113531776
XM_026923659.2 mRNA downstream 119096 16618474 ~ 16622145 (-) True ttll2
XM_034313493.1 mRNA downstream 120383 16618474 ~ 16620858 (-) False ttll2
XM_026922778.2 mRNA downstream 140670 16597116 ~ 16600571 (-) True gpr31
XM_026923321.2 mRNA upstream 2556 16809878 ~ 16812493 (-) True LOC113532136
XM_034313914.1 mRNA upstream 11359 16818681 ~ 16836599 (-) True moxd1l
XM_034313630.1 mRNA upstream 74515 16881837 ~ 16909398 (-) True si:ch211-203k16.3
XM_034313728.1 mRNA upstream 106383 16913705 ~ 16961616 (-) True efr3bb
XM_026923095.2 mRNA upstream 110243 16917565 ~ 16961617 (-) False efr3bb
TU351456 other downstream 183314 16555103 ~ 16557927 (-) False G296802
TU351457 other downstream 183314 16555476 ~ 16557927 (-) True G296802
trnal-cag_16 other downstream 234328 16506831 ~ 16506913 (-) True trnal-cag_16
XR_003403300.2 other downstream 598637 16134167 ~ 16142604 (-) False pln
trnav-cac_21 other downstream 961942 15779227 ~ 15779299 (-) True trnav-cac_21
TU351727 other upstream 235991 17043313 ~ 17046810 (-) False ttc32
TU352481 other upstream 899964 17707286 ~ 17715244 (-) False acot20
XR_003404857.2 other upstream 1268040 18075362 ~ 18105993 (-) False dpf3
TU353207 other upstream 2270682 19078004 ~ 19083465 (-) False ubr7
LOC113547697 other upstream 2458505 19265827 ~ 19267009 (-) True LOC113547697

Expression Profile