RNA id: XM_034313914.1


Basic Information

Item Value
RNA id XM_034313914.1
length 3486
RNA type mRNA
GC content 0.43
exon number 12
gene id moxd1l
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 16818681 ~ 16836599 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGATGATCTAGGACACAAtggaaagcaagagagagatcgggagaaagggagagagagagcaggagagagagagggaggagagggaCGAGAAGTGACTGAGGTTTGAGTGTAATGGAGCAGATTACGAAAGGACTTTACTAACATTTCAGAGTTCAGATCTGTTTGCTAGAGATAAAGAGATCATTATTGACTTTTGGGTGCCATGATGTCTGTTCCAGCTCTCCTCATGCTTCTGGTCTGGTTCTTGGGCCAAACATCAGGAGCCGATGTGGATCCAACACTGCCTTTCTCTGAGTATCTAGACTCAAACACAAATGTTCTTCTCAGGTGGGGTTTTGATGTGGTAAGGGACACCATCACGTTTGAGGTGACGGTGAACACCACAGGCTGGGTCGGCTTTGGGTTCAGTCCCAATGGGGGAATGGCTGGATCGGATATCGTCATCGGAGGAGTCGGCCCTGGTGGGATATATTTTACgGACAGAAACGCGGCCGGGAACTTTATGCCAGCTCTGGACCAGAAGCAGGACTATAAAGTCCTCTCTCTGACCGAAGCGAATGGACAAACCGTGATGAAGTTCCAGCGATCCATCAAGGCCTGTGATGAAAACGACTTTTCCATCACTGAAATGCCAGTGAAGCTGATCTACGCTTACGGTAACACCGATGACATCGGCTATCACAAAACCCTGCGAGGCACGAAGGAAGTGAACCTTCTGAGCTACATGCCCCGAACCAGCATCCCTGACAGCAAATACTTTGACCTGACCATGACCAACATAGAACCAGTGATCCAGAACAAGGACATCGTGCATCACTTGTTGCTGTACCGCTGTCCACCATCAGTGACCAAGCCCTCTGGGATACACTGTAGTTCTTCTACAGCAGAGACAAGAAACAGAGTGCTCGGTCACCTGCCTTCGCCGCTGAACTTTTGGGGTGTTGGAGGAGGAGCTTTTGAATTTCCTGAAGTGGCTGGACTTCCTGTGGGTGGAGATGGAAATGGGACCCTCTACAGGCTTGAAGTGCACTACAACAACCAGTACAAGACTGCAGgtcttgTTGATAACTCAGGCTTGCGTTTTTACTACACGGCTCAGCTGCGGCAGTTCGATGCTGCTGTACTGCAGACGGGACTCCTGGTGACAATCGGGTTCGAATATGCAATCCCACCTAATGCTACATCCTTCCTCACATACGGCCTGTGTGACACCAGCTACCTTCCCCAGGTCCTCTCTCAGTCACCAAAGGACTTACAGGTTTTCGCAGttatcctgcacacacacctgacagGAAGGAAGGTGCGAGTCGGCCACTtcagGGATGGAGAGCAGATCGATTTCTTAGCGCTGAATGAACACTATGATTTTGAATTCCAGCAGGTGACACACCTGGGAAAAACCAAAACAGTTAAGCTGGGTGACCAGCTCTTGGTGGAATGCACATATAACACAAACAATCGAACAGAACTCACTTGGGGGGGTCTGGAAACTCATAATGAGATGTGCCTGGCTTTTCTCTACTACTACCCCGCTCTAGACCTCAGCACCTGTAGCAGCCTCCCCCACAAGAAGACGCTCATGACCGAGATGGGAGCCGCTAATGCCACAGACTGGATGAACATGATGAAGACAAAGGTGTGGGATAACAACTCAGTCCTGGAGTATCAGCAAACGCTGAAGAGGATTCAACAGTACATACTTGTTGGAAGCTTAGAGAACATCGTGCTCAACACGGGGAAGATTCCTGAGCTGAAGCTGTCTCCGTCCAGCAGCTGTTTACGAAGCAGAGCTGAGATCCAGAGCCCTGGTACAGTGATCCTGCTGCTCGGACTGATGCTCTCACTGATCCTCTTGTAGTATCTTCACCTGCCAAACAACAGTCAGACTTCGGCTGTAGAAAATAAACTGATGTAACTGTAATGAATGATTAAAAGTCACttcatgtgatttttcagtCAGATTGCACTTAGGCTTAAAGTAAAACGATTCACAGTTGTGCAATTGATCAGAGGATATTCCCTGGTTTAAATCAATGTCGATTTTTGTTCCGAATGATACACGAACCTGCTAGTGATTTACTCTAGCTTTTAACTCTAACACAGAGTCTAAACTGTGCTGCTGCAACTTTACTGTGTCTAACATTTCGACTGCCAGTTCaaacaaaattttttgtttgaatttttctgactttttttttagaaagtagATTGTGGTCTAATTAAATGATCTACATTTTACATCATCTGTATATTTGTAGAAATTTGACTGTGAAAAATTTTGATTTTGTGTCTGGGAtgttagttttttatttgtagttgccAATTGTACAAGCTGCATCTTAATGCACTTCACAGGGATGTGATACAGTACTGGAATCTTTTACAGTCTCACCCTGTTAGTTAAATAACACTGCAACATCCAGGCCTGTAAAATATCAAGAAACTTCCACAGACTTGTGTCTGTTTTCTAATcagtaataaattcattaacGACATACCCGTGTCAGAGAAGAGAAACCAAATTCTATTTCTGAACAACTTGCTCTATACTTCCTGTGAACATGGCTTCAtctacaaagcagctttagaaaCCCAGCTGAAGCTCTGTCACTTGCGGAAACTCTCACACCTGCTTGCAGTTCCACAGCAGAAATCATCACTTTCACTTCTGCTTTACTTTCTAAGAAATGCTTTTACAAAAAGAAATGTTGTCAAAATCTGTGATGCATAAAAATGGGGTTTCAAAGTGTCGAAACAAATGAAAGATTTCATGGTCTAAATTCATGGTAAtaacattactactactactactactactactacttttaatgtaactataaatggataaaaagtaaccattgacaaattgctgtggtgtataAGAGGAACAGAACACTTCAGGCGTGTGAGGAAGGGAAGCAACTTCGgggcggtaacagtaactccgcttcacatcAAGCTGCATCTCACCACCCtggcactgattattttcctacaatagCATGTCTCAGAGTGTCTTCTTCCTTACATACCAGCTTCACGCTAGCTCGCTAGTCACCTAACATCATCTAACTGTTACTGTAAAGCCAATGTGCATGCAATCTGAACtataaaataactatatattGTTAATTAACATTAAGGCTATCGGTCTGATTGGATGGAAAGAGTcgcacaagaaaaaaaacaaaacttattCAATCACAGATCCATGCACTGACAACGTACACGCTTGTAACACGTCATTTACAGCTAAAGATATTTTCCtctgcatttaaaatgatttatttatacagtgtatttatcttttttgtGGGCTTGATGgcagatttacatttttttctcgcacacatttgcatttttgttttacatgtATGCAAAATCTGAAACACAACTACACATTTCTGTGCATTTGTCaaaattacattataaatgcaaaatagtTGCCATCTTTTTTGACTCCACAGAGAAGTGATGAAGGTGAA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0004497 monooxygenase activity molecular_function
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU351652 lncRNA downstream 11359 16741241 ~ 16807322 (-) True G296965
TU351493 lncRNA downstream 203910 16614540 ~ 16614771 (-) True G296835
TU351480 lncRNA downstream 226561 16591913 ~ 16592120 (-) True G296823
XR_004580104.1 lncRNA downstream 476611 16339082 ~ 16342070 (-) True LOC117599726
TU351366 lncRNA downstream 653393 16163491 ~ 16165288 (-) True G296733
TU351686 lncRNA upstream 8516 16845115 ~ 16846008 (-) True G296993
TU351687 lncRNA upstream 9522 16846121 ~ 16847214 (-) True G296994
TU351706 lncRNA upstream 42797 16879396 ~ 16881821 (-) False G297011
TU351709 lncRNA upstream 42797 16879396 ~ 16881821 (-) True G297011
TU351744 lncRNA upstream 212175 17048774 ~ 17048993 (-) True G297044
XM_026923321.2 mRNA downstream 6188 16809878 ~ 16812493 (-) True LOC113532136
XM_034313471.1 mRNA downstream 173924 16625619 ~ 16644757 (-) True LOC113531776
XM_026922675.2 mRNA downstream 174177 16625619 ~ 16644504 (-) False LOC113531776
XM_026923659.2 mRNA downstream 196536 16618474 ~ 16622145 (-) True ttll2
XM_034313493.1 mRNA downstream 197823 16618474 ~ 16620858 (-) False ttll2
XM_034313630.1 mRNA upstream 45238 16881837 ~ 16909398 (-) True si:ch211-203k16.3
XM_034313728.1 mRNA upstream 77106 16913705 ~ 16961616 (-) True efr3bb
XM_026923095.2 mRNA upstream 80966 16917565 ~ 16961617 (-) False efr3bb
XM_034313729.1 mRNA upstream 80966 16917565 ~ 16961617 (-) False efr3bb
XM_034313730.1 mRNA upstream 80966 16917565 ~ 16953647 (-) False efr3bb
TU351456 other downstream 260754 16555103 ~ 16557927 (-) False G296802
TU351457 other downstream 260754 16555476 ~ 16557927 (-) True G296802
trnal-cag_16 other downstream 311768 16506831 ~ 16506913 (-) True trnal-cag_16
XR_003403300.2 other downstream 676077 16134167 ~ 16142604 (-) False pln
trnav-cac_21 other downstream 1039382 15779227 ~ 15779299 (-) True trnav-cac_21
TU351727 other upstream 206714 17043313 ~ 17046810 (-) False ttc32
TU352481 other upstream 870687 17707286 ~ 17715244 (-) False acot20
XR_003404857.2 other upstream 1238763 18075362 ~ 18105993 (-) False dpf3
TU353207 other upstream 2241405 19078004 ~ 19083465 (-) False ubr7
LOC113547697 other upstream 2429228 19265827 ~ 19267009 (-) True LOC113547697

Expression Profile