RNA id: TU351706


Basic Information

Item Value
RNA id TU351706
length 2404
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G297011
representative False

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 16879396 ~ 16881821 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CATATCAGAATTACacttgtggctttttttttaatatcattcaTGGTGCAAATAACATTGCAGACATCGCTATACATAAAATGATACATCATGAACTGAAGCACATGCATCTGTTAacgtgtgtatgtttgtgtatatatatatatatatatatatatacacacacacgatcgtgtgaggaggaaaagaagtgctcgagaaaaagaaaagattgcACAGAGATGGAAATGTGGCTttctttggaggaaaaaaaagcatttgtatgatatcagattaaaaatacatgtgCAAAAAGGACCAGCCCTCCTTTAGATGCTTGAAAACCAGACTTgtgatcaggtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgagattatagACAGGTTATACACATTGCTTGTTGTATTTTGGCACTGTAAATGGAAAGTGCATAGCATATGACGCATGCTGAAGTTCCTCAGCACATAAAGGCACAGTGAAGAGGCCAAACCTCTGCGACTCCAAAAtaaaccaaccaaaaaaaaaaagacactgtaGGAAAAAAGGGTGTAAGACACTCGTTCACCTCGTCATTCTTAATAGACGattcttttctttcatattgAATCACAGTCCCATAggacatgacatgacatttgTGCCACtggaatatttattttgatattgtaaaaaaaaaaaaaaaaaaaggaatttgtaGGTAAAGTTTTAAAACACAATTCAATACAAAATTCAATGTTAACAAATTCTGATGTGACTCATTTGGTCACACTTTATTTTCTACATTGGGCCTTCATAAAACACTCCTAAGCATTGCAGAAATCTTATCTAAAGCAACACATATGTAAAGATTTTTACACAGTATGATTTTACatagtgattattattattattattattattattattattattattattatgggtcAAACATACTGTAATTTTCATCATCTATAGCAAGttcttcatttctgtttataCACTCTATTACAGCGTTGTCGACTTTGTCGattctgagatgtttatttaacatttatggaaggagtctccagtgtcagtgctttgtaacagtcagtggtaaagctggtTGTAAAGTTTTTTGCTGCAGTCAatacttcaggacagaggaatttctCGGTAAGAACTGCAAGATTTTGTCTAATTAAAGTAAAgggacgactgtttatagccgtTACAACCTCAgtgacttgtttcatggacagtaaatgtaactataatcactataatgtaataaataaaaattgctcGAGTTGGCAAATTGATGTTTCGttagaggaatacaacacttcaggatgtgctgttattggaaaataatcaacttcatggtggtaacagtatctACTGCACCCACGTTTACCTTCTACGACTTCACTTAATTAAAAAGCCCAAATACTGGATTTTATAGCTGATATCTGAACACTtcatgaatgtgctgttagaggggaaaaaacaacaaaagctaTAAAATTCACAGAAacaaatcttcaactgtctgCTTATAATGATACAGATGATGTTGTGATGTCACCTCATCGGTTTTTGAGCGAAGACTTTCATAATTTCTATGATACTTATGAATGTGCTATGAATGCCCAGTgtataaataatacacaaaagcagaaataataaagtgttacctAAATTTCACGTTCGTACTTTGGCAGCGCAGATCCAGTCCAGATTCAGTTTCCGATTCATGTTCATCATGAGGCACACAATCATTTCCTgactgctgattggctgaaacgACTTtcataaagtaaatataaaatgatttgtgGCACCAAAATCTGAGCAGGAATTTTGCTGAATCTGATTATTTTAGAATTAAATGAGATCACATTTACATGCAAATTcaacttaattttatttattatctaaattttaaaactttatacaCAATTTCAAAGCATAAAAATTCAGACTGATCCTCCTAGTGGCACAAATATCATATCCATAATAATCTCCTCAGTGGACTGGAGAGAAAACACTGGACGGAATTAGCATTAAGGAAACACACAGCGAGTGATGGTGTTAAAGAGTACTGAGAGTACCTGGTGTCTGTGCTACCTCTTACATCCTCGCTCCGTTTGGGATGAAGACCTTGGCTTAAAAACAGAACATTACAGGCAGATGTTTCATGTAGATAGAGAGGATGTGATATTTTAGCAAACCTCCTTTGGTCTGAGATCAACAAAATCTTTTTATGGCACTGAGGTCATagacaaatacagatattaaagaggaacagagacaaagaaaaagagagagagtgagtaagaAAAATAGAGAGCGGAAGAGAGCCCTGTGTGTGAGATTCAGTGCAGTCCTCTTCTTTACATGGTAGTGAACTGACTGTGAGCGTGTCTCAGCTTCTCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU351687 lncRNA downstream 32182 16846121 ~ 16847214 (-) True G296994
TU351686 lncRNA downstream 33388 16845115 ~ 16846008 (-) True G296993
TU351652 lncRNA downstream 72074 16741241 ~ 16807322 (-) True G296965
TU351493 lncRNA downstream 264625 16614540 ~ 16614771 (-) True G296835
TU351480 lncRNA downstream 287276 16591913 ~ 16592120 (-) True G296823
TU351744 lncRNA upstream 166953 17048774 ~ 17048993 (-) True G297044
TU351745 lncRNA upstream 168574 17050395 ~ 17050639 (-) True G297045
TU351749 lncRNA upstream 172543 17054364 ~ 17055003 (-) True G297049
TU351750 lncRNA upstream 182345 17064166 ~ 17064385 (-) True G297050
TU351752 lncRNA upstream 183861 17065682 ~ 17066428 (-) True G297052
XM_034313914.1 mRNA downstream 42797 16818681 ~ 16836599 (-) True moxd1l
XM_026923321.2 mRNA downstream 66903 16809878 ~ 16812493 (-) True LOC113532136
XM_034313471.1 mRNA downstream 234639 16625619 ~ 16644757 (-) True LOC113531776
XM_026922675.2 mRNA downstream 234892 16625619 ~ 16644504 (-) False LOC113531776
XM_034313493.1 mRNA downstream 258538 16618474 ~ 16620858 (-) False ttll2
XM_034313630.1 mRNA upstream 16 16881837 ~ 16909398 (-) True si:ch211-203k16.3
XM_034313728.1 mRNA upstream 31884 16913705 ~ 16961616 (-) True efr3bb
XM_026923095.2 mRNA upstream 35744 16917565 ~ 16961617 (-) False efr3bb
XM_034313729.1 mRNA upstream 35744 16917565 ~ 16961617 (-) False efr3bb
XM_034313730.1 mRNA upstream 35744 16917565 ~ 16953647 (-) False efr3bb
TU351456 other downstream 321469 16555103 ~ 16557927 (-) False G296802
TU351457 other downstream 321469 16555476 ~ 16557927 (-) True G296802
trnal-cag_16 other downstream 372483 16506831 ~ 16506913 (-) True trnal-cag_16
XR_003403300.2 other downstream 736792 16134167 ~ 16142604 (-) False pln
trnav-cac_21 other downstream 1100097 15779227 ~ 15779299 (-) True trnav-cac_21
TU351727 other upstream 161492 17043313 ~ 17046810 (-) False ttc32
TU352481 other upstream 825465 17707286 ~ 17715244 (-) False acot20
XR_003404857.2 other upstream 1193541 18075362 ~ 18105993 (-) False dpf3
TU353207 other upstream 2196183 19078004 ~ 19083465 (-) False ubr7
LOC113547697 other upstream 2384006 19265827 ~ 19267009 (-) True LOC113547697

Expression Profile