Gene
RNA
| Item | Value |
|---|---|
| RNA id | trnal-cag_16 |
| length | 83 |
| RNA type | tRNA |
| GC content | 0.63 |
| exon number | 1 |
| gene id | trnal-cag_16 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047613.1 |
| NCBI id | CM018559.1 |
| chromosome length | 22090854 |
| location | 16506831 ~ 16506913 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_004580104.1 | lncRNA | downstream | 164761 | 16339082 ~ 16342070 (-) | True | LOC117599726 |
| TU351367 | lncRNA | downstream | 340986 | 16157334 ~ 16165845 (-) | True | G296734 |
| TU351366 | lncRNA | downstream | 341543 | 16163491 ~ 16165288 (-) | True | G296733 |
| TU351364 | lncRNA | downstream | 350858 | 16152334 ~ 16155973 (-) | True | G296731 |
| TU351347 | lncRNA | downstream | 364215 | 16134134 ~ 16142616 (-) | False | pln |
| TU351480 | lncRNA | upstream | 85000 | 16591913 ~ 16592120 (-) | True | G296823 |
| TU351493 | lncRNA | upstream | 107627 | 16614540 ~ 16614771 (-) | True | G296835 |
| TU351652 | lncRNA | upstream | 234328 | 16741241 ~ 16807322 (-) | True | G296965 |
| TU351686 | lncRNA | upstream | 338202 | 16845115 ~ 16846008 (-) | True | G296993 |
| TU351687 | lncRNA | upstream | 339208 | 16846121 ~ 16847214 (-) | True | G296994 |
| XM_034313841.1 | mRNA | downstream | 18262 | 16471442 ~ 16488569 (-) | True | rfx6 |
| XM_034313842.1 | mRNA | downstream | 20590 | 16471442 ~ 16486241 (-) | False | rfx6 |
| XM_026923501.2 | mRNA | downstream | 78459 | 16420761 ~ 16428372 (-) | False | vgll2a |
| XM_026923500.2 | mRNA | downstream | 78460 | 16420761 ~ 16428371 (-) | True | vgll2a |
| XM_026923612.2 | mRNA | downstream | 108571 | 16362102 ~ 16398260 (-) | True | dcbld1 |
| XM_026923762.2 | mRNA | upstream | 63500 | 16570413 ~ 16588520 (-) | False | plg |
| XM_026923761.2 | mRNA | upstream | 63500 | 16570413 ~ 16588520 (-) | True | plg |
| XM_026922778.2 | mRNA | upstream | 90203 | 16597116 ~ 16600571 (-) | True | gpr31 |
| XM_026923659.2 | mRNA | upstream | 111561 | 16618474 ~ 16622145 (-) | True | ttll2 |
| XM_034313493.1 | mRNA | upstream | 111561 | 16618474 ~ 16620858 (-) | False | ttll2 |
| XR_003403300.2 | other | downstream | 364227 | 16134167 ~ 16142604 (-) | False | pln |
| trnav-cac_21 | other | downstream | 727532 | 15779227 ~ 15779299 (-) | True | trnav-cac_21 |
| trnad-guc_29 | other | downstream | 732651 | 15774109 ~ 15774180 (-) | True | trnad-guc_29 |
| trnav-cac_19 | other | downstream | 732869 | 15773890 ~ 15773962 (-) | True | trnav-cac_19 |
| trnad-guc_28 | other | downstream | 735948 | 15770812 ~ 15770883 (-) | True | trnad-guc_28 |
| TU351456 | other | upstream | 48190 | 16555103 ~ 16557927 (-) | False | G296802 |
| TU351457 | other | upstream | 48563 | 16555476 ~ 16557927 (-) | True | G296802 |
| TU351727 | other | upstream | 536400 | 17043313 ~ 17046810 (-) | False | ttc32 |
| TU352481 | other | upstream | 1200373 | 17707286 ~ 17715244 (-) | False | acot20 |
| XR_003404857.2 | other | upstream | 1568449 | 18075362 ~ 18105993 (-) | False | dpf3 |
