RNA id: XM_034313841.1


Basic Information

Item Value
RNA id XM_034313841.1
length 3625
RNA type mRNA
GC content 0.47
exon number 20
gene id rfx6
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 16471442 ~ 16488569 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTGTGTTGAAACCCCTTCCTCACCTTCAGGAAAGTGCAAGCATCCAGCATTGCTCTTACTGTATCActccagtgttggaaagttggataaaactCCATAAGATCTTTGCTACAGCCACCGCAGCCGAAGAGGACTTACAGTGCTGATGATCTCCATCACATCAACACCGGCGACCTCCAAGATCTCCGAAACAACATGTTCTTCAAAGACAAGTttgatgaagaggaggaagacTCGGGGATTAAATCAGaggCTGACGAAAGCAATGGAACCATCTCCTCTGAAGATGACTTAGACCACCTTGAATATTCGAAGAATTTCTCTCTGAAGCAAACGGTGACAAAGAAGAGCATCAGTGAAATCATCAAGGACAAGAAGAAACAAACTCAGTTAACACTTCAATGgCTTGAGGAAAATTATATAGTTTGTGAAGGAGTCTGCTTGCCTCGGTGCATCCTCTATGCACATTACCTAGACTTCTGTCGCAAGGAGAAATTAGATCCTGCTTGCGCTGCCACTTTCGGCAAGACTATACGGCAAAAATTCCCTCTCCTGACGACTCGAAGACTCGGCACCAGAGGCCACTCAAAgtatcATTACTATGGAATCGGGATTAAGGAGAGCAGTGCTTATTATCATTCAGTGTACTCAGGAAAAGGTCTGACAAGATTCTCTGGGAGCAAGCTCAAAAATGagGGAGGTTTCACACGCAAATATTCTCTCAGTTCTAAAACAGGAACATTGCTACCCGAATTCCCAAGTGCACAGCATTTATTGCTTCACGACTCCATTTCGAAAGAAAAGGTTGACACACTGATCATGATGTACAAAACTCACTGCCAGTGTATTCTCGACAACGCCATCAGTGTCAACTTTGAAGAGATCCAGAACTTCTTGCTGCATTTCTGGCAAGGCATGCCGGACCATCTCTTACCTCTGCTGGAGAATCCAGTAATCGtggatattttttgtgtgtgtgactccaTACTATACaagGTCCTGACTGATGTTCTCATTCCTGCTACAATGCAGGATATGCCGGAAAGTCTTTTGGCAGATATCCGAAATTTTGCAAAACTCTGGGAGCCCTGGATGGTTTCATCTTTGGAAAATCTGccaaaaatcctgtcagaaaagAAGCTGCCAATAGCTCGGCGCTTTGTCTCCTCCTTAAAGCGCCAGACCTCTTTCTTACACCTTGCTCAGatcGCAAGACCGGCTCTTTTTGACCAAAACATCGTGACGGCCATGGTGAACGACATTGACAAAGTAGATCTAAACAGCATCGGCTCCCAGGCGCTCCTCTCAAACACTAGCGACCAGGACCTGGATTTCTACTCCGAATACGATTCTGTCACAGTGTTCCAAGAGTTAAAGGAGCTCCTAAGAAAAAACGCCACAGTCGAGTCTTTTATTGATTGGCTGGACTCTGTGGTGGAACAGAAAGTCATTAAGCCCAGTAAACAGAACGGCCGCTCGGTGAAAAAACGAGCCCAGGACTTTTTACTGAAATGGAGTTTTTTTGGAGCTCGTGTGATGCACAGCCTCACCTTAAACAACGCCACCAGTTTTGGCTCCTTCCACCTCATTCGCATGCTGTTGGATGAATATATCCTGCTGGCAATAGAAACACAGTTCAATAACGATAAAGAGCAAGATCTACAGAATCTCCTGGATAAATATATGAGAAATGCAGATGCCAGTAAGGCGACGTTCACGGCTTCACCGAGTTCATGCTTCCTGGCAAATCGTAATAAAGCAGGGCTTGTGAACAACGATTCATCTGTAAAGAACGAGACCCAGCCGGAGTATGCACACCTGTCTGTCCCAGGAGCTCAGCACGGACTTGGGGCCACCATGGTGGTGTACCAGGGGCCAGACACAGACAGCTTTACACTATCTGgccAGTTGGACTACTCCCAGAGCAGTGGTCCGTTGATCACCCCTCCCATCTCTCCGGCCATGGCGAACCGAGGCAGTGTGATCAACCAGGGCCCGATGGCAGTGAGATCACCGAGCAGCTGCCCTGTCCAGCCTCATGCACCCTGCCAGGCTTTCCCTGATGCCATGTACCAAAGCCTGCCTTCCTCCACCTACTACACCAGCTCCTCCACCTACCAGCCTACAAGCCTGACACAGACCCACACGCCCCCCTCGGCTTACCAGGCTCGCAGCGAGTGTTCACGCTATTCCTCCTTCAGTGGTCAGCAGCTGGTTAAGGACTGCTTTAATAGCAGCTGCAGTGGTGTAGCGTACAGCTCCAGAGCCTCGTCAGTAAGCTACCCGTCCACCTCTGAGCCCACCATCGAGGTTCAGGGAGTACAGCTAATGGACTACGGATTTGCAGGGAGTGGAGGAGGATGTTCAGGTCCAGCGTACACCAGCGCTGCACACAGTGGCTACTATGGGAACAGTGGCTACGTGGACACGCAGAGGATGGGCTCTCTAATCGATCAGCATGTATCAGTGATCAGCAGTGTGACCTCCACTCGCTCTGTCCCTGCATACGCTGAGGTCCATGACCCTCTCAACATCCTGAACGACACGAGCAGAAAGCCAACAACACCTTACTACCCTGCACAACCTCCTCTAATTACACGCTCCGCAGGTTCTTCAATAGCCCCTCCGATCCCTTGCTCTGTTTCTCCGTGCATGTATGGCGCTGCTGCTCAGTATCACCATTCCCAAGATGGCTTGCTACCTCACCATAGTGGCGCTGAGATGAGGGACATGGTCTCCTCCCTGCCTCCTATCAACACCGTGTTCATGGGGTCAACCGGAGGACCACCGTGACTGTTAATAAACCTTATTAACTGACTTTTCTAAGGAAATAGTACTGAAATAAACTCCCCATGTCACAGACTCTTCTGTGATACTAGATGGACTAGAGGACAGTCAGCAggtctgtatttaaaaaattggtattttagagaaaaaatattgtatatataaaattatttaaatgtaaatgtaacacaaatgtaaatgtaatgcaaCGATGCTATGTGTGTCTGCTATCTGTATCCATTTAGTGTTACAAACATCAGTATCTGCCCCTGTATCTGTATGCTGtctttggatttaaatctgaagtgggcgtggcctaaaccagtAGGGTGTATGTTTATAGCCActggaaaactggaaaaaaaaagacctcaaAGGTAGAAACGGCAGCATTGCCAGCatagtgtgtgatgtttgcGTAGATAATGGAGAATAAAACTGTGTGACAAATGCAAGCGAGCATTCTAGCAGTTGATTAGCCGACCAGCTATTAGCAAGCACTGGAaaactggagagaaaaaaaacctcaacacTGTCAGCATGTTTGTAACAattttagttggttctattttccaaaatataaacaaaacagtagcctaatttaaaccaccatgaccctgaccaggcagttactaaggatgaatgaataaacactgtaaatggaTCAGGCAGCACTGCAgactttcattttaatgaatgtggtcttttttgtccttttttgagCTTCGTATCTGACAGCATGAAATCAAAAACCTCCTGCTCGCtcaacttttttgttgtgtccgGTGGGATTCCAGGCCAGAAACACACCTCAAGTCTAAATCAGATTCCTTATGAA

Function

GO: NA

KEGG:

id description
K19521 RFX6; regulatory factor X 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004580104.1 lncRNA downstream 129372 16339082 ~ 16342070 (-) True LOC117599726
TU351367 lncRNA downstream 305597 16157334 ~ 16165845 (-) True G296734
TU351366 lncRNA downstream 306154 16163491 ~ 16165288 (-) True G296733
TU351364 lncRNA downstream 315469 16152334 ~ 16155973 (-) True G296731
TU351351 lncRNA downstream 328826 16134134 ~ 16142616 (-) True pln
TU351480 lncRNA upstream 103344 16591913 ~ 16592120 (-) True G296823
TU351493 lncRNA upstream 125971 16614540 ~ 16614771 (-) True G296835
TU351652 lncRNA upstream 252672 16741241 ~ 16807322 (-) True G296965
TU351686 lncRNA upstream 356546 16845115 ~ 16846008 (-) True G296993
TU351687 lncRNA upstream 357552 16846121 ~ 16847214 (-) True G296994
XM_026923501.2 mRNA downstream 43070 16420761 ~ 16428372 (-) False vgll2a
XM_026923500.2 mRNA downstream 43071 16420761 ~ 16428371 (-) True vgll2a
XM_026923612.2 mRNA downstream 73182 16362102 ~ 16398260 (-) True dcbld1
XM_034313852.1 mRNA downstream 137371 16327581 ~ 16334071 (-) True LOC113531921
XM_034313953.1 mRNA downstream 144577 16313611 ~ 16326865 (-) True nus1
XM_026923762.2 mRNA upstream 81844 16570413 ~ 16588520 (-) False plg
XM_026923761.2 mRNA upstream 81844 16570413 ~ 16588520 (-) True plg
XM_026922778.2 mRNA upstream 108547 16597116 ~ 16600571 (-) True gpr31
XM_026923659.2 mRNA upstream 129905 16618474 ~ 16622145 (-) True ttll2
XM_034313493.1 mRNA upstream 129905 16618474 ~ 16620858 (-) False ttll2
XR_003403300.2 other downstream 328838 16134167 ~ 16142604 (-) False pln
trnav-cac_21 other downstream 692143 15779227 ~ 15779299 (-) True trnav-cac_21
trnad-guc_29 other downstream 697262 15774109 ~ 15774180 (-) True trnad-guc_29
trnav-cac_19 other downstream 697480 15773890 ~ 15773962 (-) True trnav-cac_19
trnad-guc_28 other downstream 700559 15770812 ~ 15770883 (-) True trnad-guc_28
trnal-cag_16 other upstream 18262 16506831 ~ 16506913 (-) True trnal-cag_16
TU351456 other upstream 66534 16555103 ~ 16557927 (-) False G296802
TU351457 other upstream 66907 16555476 ~ 16557927 (-) True G296802
TU351727 other upstream 554744 17043313 ~ 17046810 (-) False ttc32
TU352481 other upstream 1218717 17707286 ~ 17715244 (-) False acot20

Expression Profile