RNA id: XM_026923762.2


Basic Information

Item Value
RNA id XM_026923762.2
length 2687
RNA type mRNA
GC content 0.48
exon number 20
gene id plg
representative False

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 16570413 ~ 16588520 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCCTTATTGACATGGCCTACGAGACAAAACCTGCTCTGAAATCAATGTGTGTTAGTGCTACAGCATGGACGTCAACAAAGCAACTCTAATTCTCTGTGTTTTCCTTTACGCAGGTGTCTTTAAAGTTCAGACCCAGAGcacagTTTTAGATGGGTACACTAAAACTGATGGTGCTTGGATtctcacactgcaaaaaaatcagTACCGTGCAACATCAGCGGAAGAATGTGCACTAAAGTGCAACGCAGAAACACTGCTCACATGCAGGTCCTTTCTATTCACTGAAAAAGATCAGGAGTGCAGAACAATACCAGCCAACTCGAAGATAGAGCCGGTGCTTCGGAGAATGAGTACAGCTCTTTATGAGAAGAAAGATTATTTACTTGAATGTCTGACTGACAGCAGTAGCAACTACAGAGGGACAAAGAGCAGGACAAAATCGGGAATAATATGTCAGCGCTGGGAGTCTACATTCCCTCACAAGCCGAACATCACACCGAAGACGCATCCGAAAGCTGACCTGGAGTCCAACTTCTGTCGAAATCCAGATGGAGACAGCGAGGGCCCCTGGTGCTACACCGTGGATGCGAATAAGAGATGGGAGCACTGTGACATCCCCAGCTGCAGTGTGGAATGCATGTACTGTAGTGGAGAAAACTACAGAGGGAAGATCTCCATCACTGAGGGAGGATTCACCTGTCAACGCTGGGACTCCCAGAAACCCCATAACCATGGATACATTCCCTCAGTtcttccTGACAAGTACTTGGAGGTGAACTACTGCAGAAATCCAGACGGAGAACCCAGACCTTGGTGTTTCACCACAAGTCCATCCAAACGCTGGGATTACTGCTCCGTCCCTCGCTGCACGTCCCAGCCTCCAACCATCGCAACAGAGTTGACCTGTGCTACAGGAGACGGGAATTCATATAGAGGCAACATTGCTGTGACCATTTCAGGGAAAACTTGCCAAGAGTGGTCATCTCAGTTTCCTCAGAAGCATTCCAGAACACCACAGAACTACCCTTGCAAAGGTCTGGATAACAACTACTGCAGAAACCCTGACAACGAAAGGAGTCCCTGGTGTTACACCACCGACCCAGAAACTCGCTGGGAGTACTGCAATATACCGAGCTGTGGTGCCGAGCCACGCCCAGACGAGCCAGTTATCGCTCCAGCTGAGGACTGCTACACAGGAGATGGCAGCTCGTACCGTGGAGTCATGTCAGAGACCATCAGTGGGAAGAAGTGCCAGTTCTGGGCCTCTATGGAACCTCATAGACATACAAAGACACCACAGACATACCCCAATGCAGATTTAAGAAGAAACCTGTGCAGGAACCCTGATGGTGACACAGCTCCATGGTGCTACACAACTGACCCCTCTGTGCGCTGGGAGTACTGTAAGATAGAGCGCTGTAGCATTCGCCCCAATCAGACCATTCAGTCCACTCAGAGTGGGCGTATCCCTATGGCCCCCGTAACACAGGCTCCTATTTCTTCACAACCCGCAGaagattgCAAGCTTGGCAATGGAGCAAATTATCGAGGTCCGATATCGAGGACCGTAACAGGAGTGAGCTGCCAAGCCTGGAGTGCCACAACACCCCACAGTACCACCTTTACACCTTCAACTCACCCTGACAAGGGTCTGGAGTCTAATAATTGCAGAAATCCTGATAATGACCCAAACGGACCTTGGTGTTACACTATGGATCCTAGAAAGAAGTGGGACTACTGTTATATTCCAGACTGTGATACACCAAAATGCGGACAGCCAGCAGTAAAACCAAGACGCTGCTTTGGCCGGATCGTCGGAGGATGCGTCTCTAAGCCTCACTCTTGGCCTTGGCAGATCAGTCTCAGAACCAGCAATGGCTTCCACTTCTGTGGAGGAACTTTAATCCATGCTCAGTGGGTCCTTACAGCAGCTCACTGCCTTGAACGATCTAACAGACCATCTGCCTACAAAGTATACTTGGGAATCCATTCAGAAAGGGCAAATGAGGAGTCCAGACAGATCCGAAACCTGGAAAAGATTATAAAGGGGCCAGCAGGAACAGATATCGCTTTACTCAAGCTGGAAACGCCAGCTGTTTTAAATGATAAAGTGTCTACAGTGTGTTTGCCTGAGAAAGACTACATCGTGCCCAGCGGGACAGAATGCTATGTTACAGGCTGGGGAGACACCCAAgGAACGGGGGGAGACGGCATTCTGAAGGAGACTGGCTTCCCAGtcattgaaaataaagtgtGCAACCGTGCAGCCTACCTGAACAACCGAGTGAAGGACAATGAGATGTGTGCAGGAAACATCGAGGGAGGAACTGACAGCTGTCAGggtgaCAGTGGAGGTCCTCTAGTATGCTTTGCTCAGAACACCTTCGTTCTTCAGGGAGTGACATCGTGGGGTCTCGGCTGCGCCAATCCCATGAAGCCTGGTGTGTATGCTCGTGTCTCCAAGTTCACTGACTGGATCGAAAACGAGACAAAGTCAGTTTCTTGAGTGTATCAGTCCAATGACAGGCATCCAAGTCTGAAGTGCAAATTAAAACTTAGGAAATGTAAATCAACAGTTCTCTGTTTCTGAACTCTTTTTGAAGcttaataaaaacatgctttCATTTTGCACCTAATTTTATCAGATGGCAATTTATATGCAcacattaaagaagaaaaatttggA

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004580104.1 lncRNA downstream 228343 16339082 ~ 16342070 (-) True LOC117599726
TU351367 lncRNA downstream 404568 16157334 ~ 16165845 (-) True G296734
TU351366 lncRNA downstream 405125 16163491 ~ 16165288 (-) True G296733
TU351364 lncRNA downstream 414440 16152334 ~ 16155973 (-) True G296731
TU351351 lncRNA downstream 427797 16134134 ~ 16142616 (-) True pln
TU351480 lncRNA upstream 3393 16591913 ~ 16592120 (-) True G296823
TU351493 lncRNA upstream 26020 16614540 ~ 16614771 (-) True G296835
TU351652 lncRNA upstream 152721 16741241 ~ 16807322 (-) True G296965
TU351686 lncRNA upstream 256595 16845115 ~ 16846008 (-) True G296993
TU351687 lncRNA upstream 257601 16846121 ~ 16847214 (-) True G296994
XM_034313841.1 mRNA downstream 81844 16471442 ~ 16488569 (-) True rfx6
XM_034313842.1 mRNA downstream 84172 16471442 ~ 16486241 (-) False rfx6
XM_026923501.2 mRNA downstream 142041 16420761 ~ 16428372 (-) False vgll2a
XM_026923500.2 mRNA downstream 142042 16420761 ~ 16428371 (-) True vgll2a
XM_026923612.2 mRNA downstream 172153 16362102 ~ 16398260 (-) True dcbld1
XM_026922778.2 mRNA upstream 8596 16597116 ~ 16600571 (-) True gpr31
XM_026923659.2 mRNA upstream 29954 16618474 ~ 16622145 (-) True ttll2
XM_034313493.1 mRNA upstream 29954 16618474 ~ 16620858 (-) False ttll2
XM_034313471.1 mRNA upstream 37099 16625619 ~ 16644757 (-) True LOC113531776
XM_026922675.2 mRNA upstream 37099 16625619 ~ 16644504 (-) False LOC113531776
TU351456 other downstream 12486 16555103 ~ 16557927 (-) False G296802
TU351457 other downstream 12486 16555476 ~ 16557927 (-) True G296802
trnal-cag_16 other downstream 63500 16506831 ~ 16506913 (-) True trnal-cag_16
XR_003403300.2 other downstream 427809 16134167 ~ 16142604 (-) False pln
trnav-cac_21 other downstream 791114 15779227 ~ 15779299 (-) True trnav-cac_21
TU351727 other upstream 454793 17043313 ~ 17046810 (-) False ttc32
TU352481 other upstream 1118766 17707286 ~ 17715244 (-) False acot20
XR_003404857.2 other upstream 1486842 18075362 ~ 18105993 (-) False dpf3
TU353207 other upstream 2489484 19078004 ~ 19083465 (-) False ubr7
LOC113547697 other upstream 2677307 19265827 ~ 19267009 (-) True LOC113547697

Expression Profile