RNA id: XM_026922675.2


Basic Information

Item Value
RNA id XM_026922675.2
length 2747
RNA type mRNA
GC content 0.41
exon number 9
gene id LOC113531776
representative False

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 16625619 ~ 16644757 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaaaaagagaagctgGATTTTTAATCTGCCAAAATGATAAGCCGAAATACCAAAAATGTGCTTGTGGTGTCTTTTggatttttgttcttgtttacGGCCTACGGAGGACTGCAGAGTCTACAGAGCAGTCTAAACGCAGAGGAAGGAATGGGCGTTATCTCGCTGAGTGTCATCTACGGAACCATCATTCTGTCCTCCATGTTTCTGCCTCCCATCATGATCAAAAACCTGGGCTGTAAATGGACCATCTTCATCTGCATGGCCTGCTACATCAGCTATTCTTTTGGAAATCTCTTCCCTGGATGGCCGAGTCTGATCGCTACATCTGCTATTCTGGGTTTGGGAGGCTCCCCGCTTTGGTCTGCTAAATGCACGTACCTCACCATCAGTGGGAATGTACAGGCagacaaagaaaacaagaaaggcCAGGATGTCATAAACCAATACTTTGGCATGTTCTTTCTCATCTTGCAGTCGTCCGCCGTATGGGGAAACCTCATGTCATCACTTATATTTCAACAAGACAGTAACATAGCTGAAATCCCTGAGGAGAGACTGCAGTTCTGTGGTGCTGCCCTGTGCAACGAGAACTTCACCACCACGGGGAACTTCACACGGCCAGAGCAGAAGCTCGTCAACATACTGATGGGCTGCTATATCGGTGTGGGGGTTCTGGCGATGGTCCTTGTGGCAGTTTTCCTGGACAACATTGATGGAAAAGAAGCAAAGGAGTTTCGGAAGAACAAAAGCAACCAAAAGTTCTGCAGTACCTTCCTGGCTACGTTCAGGCTTTTAGGAGATAAGAGGCTGTTAATGCTCATTCCCTTGACTATGTACAGTGGATTTGAGCAAAGCTTCCTCGCTGGTGAATACACCAAGAATTATGTGACCTGTGCATTGGGAATCCATTATGTTGGATTTGTCATGATCTGCTTCGGTGCTGTGAATTCGCTGAGCTCTTACACATTCGGGAAGCTTGCGCAATACACTGGGAGGATCGCCCTCTTCTGCTTTGCCGCTGTGATAAACCTGAGCTCTGCGATAGCTCTGCTGTACTGGAGGCCTCATCCGGACCAGCTGCCTGTCTTCTTCGTGTTTCCTGCTCTCTGGGGTATGGCAGATGCTGTGTGGCAAACACAAACCAATGCACTATACGGCATTCTGTTCCCTCGGCACAAGGAGGCAGCATTCGCTAATTATCGCATGTGGGAGTCTTTGGGCTTCGTGATAGCCTTCGCGTACAGCAcgttcatctgtctgtccaccAAACTCTACATCCTCATCGCAGTTCTTTTGCTGGCCATGGTGACGTACCTCTGGGTGGAGTACAATGAGTACAAGCATCCTACTCCAGCAGTGAAACGTGACACTGACAAGCTGGATGAGACGTACCTTGAAGACactgagaaaaaacagaagattATTAGTCAGACAAGATTATAGGCAAGGATACAGAGAGTgtaatctgttttgttttgtttttggtgttttttggagggtgggggtggggggtaaTTGGTCTAAGTCATGAATGGATGCTTTTTTAGTCATAGCTAACACCTTTGCATTTaaactaacaaacacacaaacaaatagccattattattattattattattattattattattattatcatcatccatccattttcttccACTTATCCGGGTCTGGGTCAAGGGGGCAGCAGTATAAGCAGAGACGCCCAGACCTCCCTTTCCCTGGCACCTCCCCTAGGTCTTCCATGGGAATATCCAGGCGCGCCCAGGCCAGACGAGAGATATGCTCTCTCCATCTAGTCATGGGTCTGACTAGCTTACCGAAACACCTCCCCGggggttattattattattattattattattattattattgttattattattattattatataagaaaagaataaaagaagatttggtttattgtttttttaaagcacatttcCAAAGCCAAATGATTGGAGAtgattttcacatgaattttCACATATTTCAAGTTATGCGCTTTCATATTAAAGTATCTaaacacaaggaaaaaaaatcatgaagtataatgaaatcatgaaaatacatcataaaaatacatgataaaaaacatcatcaaacaTTTCATATCTGaaatctgcattattttatttagggTCAGAAAACATATAGGACTAATTATGTCACATAAGGCATTGTTTATTACCTAATTTAGTGGTCACTGGCTAATTGGTGGTCAAAAGTGTCCAGTATTTGTTTGGTACATAAGCATAAGCattgtttaaaacaaaactgCAGACGTCAAATTTGgattacatttttacagtattatgtaacattaagcattttttctctttaatgtaTTAGAAGGGGTGCTGTACGGGTATAGATATTTATAAAGCACCAATACATTTATAGTTTGTGCTCATaattacacaaattaaacaCCCAGAGATTGTTTAGAATAGTTTAGAATTAGGATAATTAATCTGTTATGATCAGTTCATGGAGTTTAATGACATGTTGAAATGTTTCTGGtggaatttttaattttttttaaatcatataataGTACGTATCACTGGTACAGCACCCTGAAATGTCATGTTCCTTGTAATGTAGCTGAATCGTAAAGTATTTTGAGGATGATTGCACTGTGGGGGATGATTGCACTAAGGTTTGGGTATGATGATACATCAACAGGAGTAGTCATTTCAACTGGAGCAAAACCTTGTAGCtcagaaataaaatctttttttt

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU351493 lncRNA downstream 10848 16614540 ~ 16614771 (-) True G296835
TU351480 lncRNA downstream 33499 16591913 ~ 16592120 (-) True G296823
XR_004580104.1 lncRNA downstream 283549 16339082 ~ 16342070 (-) True LOC117599726
TU351367 lncRNA downstream 459774 16157334 ~ 16165845 (-) True G296734
TU351652 lncRNA upstream 96737 16741241 ~ 16807322 (-) True G296965
TU351686 lncRNA upstream 200611 16845115 ~ 16846008 (-) True G296993
TU351687 lncRNA upstream 201617 16846121 ~ 16847214 (-) True G296994
TU351706 lncRNA upstream 234892 16879396 ~ 16881821 (-) False G297011
TU351709 lncRNA upstream 234892 16879396 ~ 16881821 (-) True G297011
XM_026923659.2 mRNA downstream 3474 16618474 ~ 16622145 (-) True ttll2
XM_034313493.1 mRNA downstream 4761 16618474 ~ 16620858 (-) False ttll2
XM_026922778.2 mRNA downstream 25048 16597116 ~ 16600571 (-) True gpr31
XM_026923762.2 mRNA downstream 37099 16570413 ~ 16588520 (-) False plg
XM_026923761.2 mRNA downstream 37099 16570413 ~ 16588520 (-) True plg
XM_026923321.2 mRNA upstream 165374 16809878 ~ 16812493 (-) True LOC113532136
XM_034313914.1 mRNA upstream 174177 16818681 ~ 16836599 (-) True moxd1l
XM_034313630.1 mRNA upstream 237333 16881837 ~ 16909398 (-) True si:ch211-203k16.3
XM_034313728.1 mRNA upstream 269201 16913705 ~ 16961616 (-) True efr3bb
XM_026923095.2 mRNA upstream 273061 16917565 ~ 16961617 (-) False efr3bb
TU351456 other downstream 67692 16555103 ~ 16557927 (-) False G296802
TU351457 other downstream 67692 16555476 ~ 16557927 (-) True G296802
trnal-cag_16 other downstream 118706 16506831 ~ 16506913 (-) True trnal-cag_16
XR_003403300.2 other downstream 483015 16134167 ~ 16142604 (-) False pln
trnav-cac_21 other downstream 846320 15779227 ~ 15779299 (-) True trnav-cac_21
TU351727 other upstream 398809 17043313 ~ 17046810 (-) False ttc32
TU352481 other upstream 1062782 17707286 ~ 17715244 (-) False acot20
XR_003404857.2 other upstream 1430858 18075362 ~ 18105993 (-) False dpf3
TU353207 other upstream 2433500 19078004 ~ 19083465 (-) False ubr7
LOC113547697 other upstream 2621323 19265827 ~ 19267009 (-) True LOC113547697

Expression Profile