RNA id: LOC113547697


Basic Information

Item Value
RNA id LOC113547697
length 763
RNA type V_segment
GC content 0.38
exon number 4
gene id LOC113547697
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 19265827 ~ 19267009 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAACGATGATCACACTCTTTGTCGCTCTTTACTCTTTGCTTTGTCTCTGCACAGCTGtaaaaacttCTGACATCAAGGAGCTTCACGTGAAAACGGTAAAGCGTGGAGAAAATGTAACTATGGAGTGTAACTTCAACGTGATCACAAACAAAGATAATTTAGTTTGGTACAGACAGAGTTTTGGAAAATTGCCTCAGCTTTTGGCAAAACCATACAGTAATGCTCTGGGCTACACATTTGATGAGGGATTTAACGATAGCCGCTTCAATGTTACTGTAAATGACCAAAAGTTTGATCTCAACATTAATGAATTGAGAGAAGATGATGGAGGAGAATATTTCTGTGGAGAGCTGGAGGGAAATACGATAAGGTTCACATCTGGAACACGTCTGGAATTCCAAGATGAAGAGACCAAACACCATGGTTCAACCAGAAAGCAGACAGATTCTGTTACACTCCAGTGTTCAAACAGCAGCGATGTAGAAGGTGAGAGCTGTACTGAAAACATGCGCATTTTGTTCTGGCTCTCCATTTCAAGAATCGGAGTTCTCATCATTATGGTCATTACTCTTACAATATTCCACATGATTTTGAAATCAGCATCTTAAACTTGataaaattgtgttttaattCTTGTCGATGTCAGTCTAACTGTATTTTCCAGTGCATGACATTTATTcgtttttggtatttttttgctgttaaagAGGAAGTCCAGTGTTTTTCGCTCTCTTATTCTTGCTCTGTGATTCTGTTCAAATGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU353288 lncRNA downstream 39142 19226399 ~ 19226685 (-) True G298358
TU353275 lncRNA downstream 46146 19219117 ~ 19219681 (-) True G298350
TU353274 lncRNA downstream 48588 19216638 ~ 19217239 (-) True G298349
TU353231 lncRNA downstream 177172 19088101 ~ 19088655 (-) True G298309
TU353202 lncRNA downstream 198895 19002340 ~ 19066932 (-) False G298286
TU353336 lncRNA upstream 58488 19325497 ~ 19325707 (-) True G298400
TU353390 lncRNA upstream 91061 19358070 ~ 19567558 (-) True G298436
TU353403 lncRNA upstream 110656 19377665 ~ 19451281 (-) True G298444
TU353419 lncRNA upstream 142815 19409824 ~ 19413934 (-) True G298449
TU353424 lncRNA upstream 162182 19429191 ~ 19430066 (-) False LOC113524711
XM_026948139.2 mRNA downstream 26510 19232195 ~ 19239317 (-) True cdca4
XM_026948140.2 mRNA downstream 26516 19233345 ~ 19239311 (-) False cdca4
XM_026948156.2 mRNA downstream 35454 19221008 ~ 19230373 (-) True si:dkey-177p2.6
XM_034313823.1 mRNA downstream 51876 19207134 ~ 19213951 (-) True ahsa1a
XM_026948138.2 mRNA downstream 60735 19186674 ~ 19205092 (-) True sel1l
XM_034313940.1 mRNA upstream 10982 19277991 ~ 19298028 (-) True LOC113547703
XM_026948105.2 mRNA upstream 47718 19314727 ~ 19321490 (-) True LOC113547659
XM_034313582.1 mRNA upstream 90769 19357778 ~ 19359850 (-) True LOC113524709
XM_034313563.1 mRNA upstream 107764 19374773 ~ 19410374 (-) False LOC113525604
XM_034313566.1 mRNA upstream 107764 19374773 ~ 19410374 (-) False LOC113525604
TU353207 other downstream 182362 19078004 ~ 19083465 (-) False ubr7
XR_003404857.2 other downstream 1159834 18075362 ~ 18105993 (-) False dpf3
TU352481 other downstream 1550583 17707286 ~ 17715244 (-) False acot20
TU351727 other downstream 2219017 17043313 ~ 17046810 (-) False ttc32
TU351456 other downstream 2707900 16555103 ~ 16557927 (-) False G296802
TU353415 other upstream 123990 19390999 ~ 19391487 (-) False LOC113525604
XR_004580086.1 other upstream 181384 19448393 ~ 19451604 (-) False LOC113524711
LOC113524722 other upstream 205011 19472020 ~ 19473976 (-) True LOC113524722
TU353447 other upstream 323950 19590959 ~ 19591437 (-) True G298475
XR_004580096.1 other upstream 444638 19711647 ~ 19712051 (-) True LOC117599714

Expression Profile