RNA id: XM_026948138.2


Basic Information

Item Value
RNA id XM_026948138.2
length 3457
RNA type mRNA
GC content 0.53
exon number 21
gene id sel1l
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 19186674 ~ 19205092 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGGAGTACGGGTGGAGAAAAAGATGATGGTCGGCTAGTAATGATAAAACTCGAGCTGTACACAAATGGGCAGTTCGTCAGTTTAACCGTTAAGCTAATTTACGCTAAGCTACGCTGCGTTTGTAAAGTTTGTGAGAAGGAATAATacgaattattattattataatcggTTTTATGTAAGGCTTTTCAAGTTAGACAGAAACTGAAACATGCTAACATTTCTTTGCGTCAGCTTTGTGCTAATGTttagttagcttgctaatgttgttttgctaactagctgagcgtttgctagctgtgtgtgtgtgtgtgtgttgggaataTTATTGTTATGGATACATGGAGTccttacattttgttttcagatcTGGACTATAGTCTTGTTGGCTGATTAGctagctatgtgtgtgtgtgagtgtgtgtgagtgtgtgtttggctaACCTGAGTGATGTACTAGTTATCTAGTTATCTAGTTCTCTACACTAGAGCTTAGAGTCTTGGAGCTTGTCTTAATGGGTTTAAAAGGAAGGATGTATTTTACACAAAAGACCTGCTTTCTCCTGCTGGTGTTCTCCATCATCAGCCTTAAAGTGACAGCTGAAGTGGAGCCAGAAGCCGATGATGTCCAGGAGACCGGTTTCTCTCAGTATTCACACGATGAGACGGGCGACGAGGACGACATCCCCGTGACGGGACACTCGGTCTCTCCGGAGGAAGCGGCCGAGATGGCGGCCGAGCTTCAGCGCGAGGACGCGAGAGAGCGAGgagaggagagcaaacctgacGAGATCCAGAAGGAGGATCTTCCAAGCCAACCTCCTCCTACAGACGCAAAGCCCAAGGAGGttccCGTGGTGATCGGTGGCACAGCCTCCGGGGAGCCCTGCCTGTTTCCCTTCCTGTTCCTGGGGAAGGAGTACTCGGACTGTACCACCGAGGGCAGGGGGGACGGCCGACTGTGGTGCGCTACAACCTACGACTACGAGCACGACAAGAAATGGGGCTTCTGTGAAACGGAGGAGCAGGCGGAGCAGAGGAGGCGGGCGGAGGAGGCGGAGGAACAGTACCAGCACACACTCAGACTCCTGAACAACACCAGCAGAAAGAGTcagaagagagaGTTGTATGAGAAGCTGGTGAAGGTGGCGGAGATGGGTCACACCAAGGCCATGGAGAAGGTGGGCTACGCCATGCTGTTCGGAGATTACCTGCCCCAGAACCTTCAACAAGCCAGGGAGATTTTCGAGAAGCTGGCGCTCGAGGGCTCGCCCAAATCACAGACGGCTCTGGGGTTCCTCTACGCAGCTGGATTAGGAGTCAACTCCAGTCAAGCCAAAGCGCTGGTGTATTACACGTTTGGAGCTCTGGGAGGAAACCTGGTGGCACACATGATCCTGggttacAGGTACTGGGGGGGTGTGGGGGTTCCTCAGAGCTGTGAGTCCGCCCTCACTCACTACAGACTGGTGGCCAATCACGTGGCCAGTGACGTGTCCCTGACCGGAGGCAGCGCGGTGCAGAGGATCAGGCTGCTGGACGAGATGGAGAACCCCGGTTCTCCCAGTGGGATGCTGGAGGAGGATCTGATCCAGTACTACCAGTTTCTGGCTGAAAAGGGGGACGTCCAGGCGCAGGTGGGTTTGGGTCAGTTACACTTACACGGAGGACGAGGAGTGGAGCAGAATCATCAGAGAGCTTATGAGTACTTTAACCAGGCTGCTAATGCAGGAAACACACACGCTATGGCTTTCCTTGGAAAGatgTACTCAGAGGGCAGTGAGTTTTTACCCCAGAACAATGAGACAGCGCTGCATTACTTTAAGAAGGCCTCAGAGCAGGGGAACCCGGTGGGTCAGAGTGGACTCGGCATGGCCTACCTGTACGGCAGAGGGGTTCCTGTGAACTATGAGCTGGCACTCAAGTACTTCCAGAAAGCTGCAGAGCAAGGCTGGGTGGATGGACAGCTACAGCTGGGAACTATGTactacaaTGGTATCGGAGTGAAGCGTGACTATAAACAAGCTCTGAAGTTCTTTAACCTGGCGTCTCAGGCAGGTCACATCCTGGCCTTCTATAACCTGGCTCAGATGCACGCTACAGGAACCGGAGTGATGCGCTCCTGTCACACGGCTGTGGAGctgtttaAGAACGTGTGTGAGCGCGGCCGGTGGTCGGAGAGGCTGATGAGTGCTTACGGCAGCTTTAAGGAGGGAGACATGGACTCCGCTCTGGTTCAGTATCTGCTCCTGGCTGAACAGGGCTACGAGGTGGCGCAGAGTAACGTGGCCTTCATCCTCGACCAGAagcagTCCCGGATCTTCAGTGATAATGAAACCTACCCTCGAGCTCTCCTTCACTGGACCAGAGCTGCTGCCCAAGgttaCACGGTGGCCAGGATTAAGCTGGGTGATTATCATTTCTATGGTTACGGCACTGATGTGGACTACGAGACGGCGGTGATCCACTACAGACTGGCGTCGGAGCAGCAGCACAGCGCACAGGCCATGTTCAACCTGGGATACATGCACGAGAAAGGCCTCGGCATTAAACagGACATCCACCTGGCTAAGCGTTTCTACGACATGGCTGCAGAGGCGAGTCCCGACGCTCAGGTGCCCGTGTTCCTCGCCCTGTGCAAACTGGGACTCATCTACACACTGCAGTACCTCCAGGAGCTGAACCTGAAGGAGCTTCTCTCTCAGGTGGATCTGGACCAGTTGCTGGGTCCAGAGTGGGATCTTTACCTCATGACCGTGATCGCTCTGCTCCTGGGGACCGTGATCGCGtacagacagagacagcacCAACCCGTACCGAGAGCTCCGCCCGCCCCGCCCAGACCCGCCCCCCAGCCGGAGCAGGGTGGCCCCGCCCCCGAACCCGAACCCGAACCCGACCGCGATTAAAGTCCTACAGTGAATAGACACTCACGAGAGAAGACCCGAGACTGGGAGGAAGGCGGAGTCTGAGCGGCTCTTTCCACCCACACCAGTATTAGCTAAAGGGACAGACCACTCCCATGATGCTCGGCGGGGGtgtctctcaaacacacacacacacacacacacacaccatgcgcTTAGAGAACACGGACTTGGCTCTAAAGCGTACGGCTCAGGGTACAGCGACCCGAGGCTTCACTCAGGGGTGAAGTACGGTACTTTTGGACACCTAGGACCTGCTGTGTTCCCCTGTTGGTTCGAATTAAAGTTCCCTGTCccacttcttttgttttttttgttttgttttgctaaaTAAGAAGTGAAACACACtggaaatcattaaaaacaataacgataccaaaaaaaaaaagaagaagagaaaccCCTGTTAGCATGCTTTGCTGTTCTGTGTGTTCTTGCCAGAGTGGAGTTCATTTCTAAAGATAAATTATTACAGATGTTTCTGCAGCACCAAATGTACGTCACGTAGAAGAATTAAAGTCCCCTGAAGTCca

Function

GO: NA

KEGG:

id description
K14026 SEL1, SEL1L; SEL1 protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU353231 lncRNA downstream 98019 19088101 ~ 19088655 (-) True G298309
TU353202 lncRNA downstream 119742 19002340 ~ 19066932 (-) False G298286
TU353203 lncRNA downstream 119742 19002340 ~ 19066932 (-) True G298286
TU353141 lncRNA downstream 356383 18829534 ~ 18830291 (-) True G298243
TU352819 lncRNA downstream 624840 18561597 ~ 18561834 (-) True G297969
TU353274 lncRNA upstream 11546 19216638 ~ 19217239 (-) True G298349
TU353275 lncRNA upstream 14025 19219117 ~ 19219681 (-) True G298350
TU353288 lncRNA upstream 21307 19226399 ~ 19226685 (-) True G298358
TU353336 lncRNA upstream 120405 19325497 ~ 19325707 (-) True G298400
TU353390 lncRNA upstream 152978 19358070 ~ 19567558 (-) True G298436
XM_026948121.2 mRNA downstream 3059 19171017 ~ 19183615 (-) True si:dkey-177p2.18
XM_034313487.1 mRNA downstream 23099 19139086 ~ 19163575 (-) False chga
XM_034313486.1 mRNA downstream 23099 19139086 ~ 19163575 (-) True chga
XM_026948142.2 mRNA downstream 93267 19089576 ~ 19093407 (-) False tmem251
XM_034313488.1 mRNA downstream 93278 19089576 ~ 19093396 (-) True tmem251
XM_034313823.1 mRNA upstream 2042 19207134 ~ 19213951 (-) True ahsa1a
XM_026948156.2 mRNA upstream 15916 19221008 ~ 19230373 (-) True si:dkey-177p2.6
XM_026948139.2 mRNA upstream 27103 19232195 ~ 19239317 (-) True cdca4
XM_026948140.2 mRNA upstream 28253 19233345 ~ 19239311 (-) False cdca4
XM_034313940.1 mRNA upstream 72899 19277991 ~ 19298028 (-) True LOC113547703
TU353207 other downstream 103209 19078004 ~ 19083465 (-) False ubr7
XR_003404857.2 other downstream 1080681 18075362 ~ 18105993 (-) False dpf3
TU352481 other downstream 1471430 17707286 ~ 17715244 (-) False acot20
TU351727 other downstream 2139864 17043313 ~ 17046810 (-) False ttc32
TU351457 other downstream 2628747 16555476 ~ 16557927 (-) True G296802
LOC113547697 other upstream 60735 19265827 ~ 19267009 (-) True LOC113547697
TU353415 other upstream 185907 19390999 ~ 19391487 (-) False LOC113525604
XR_004580086.1 other upstream 243301 19448393 ~ 19451604 (-) False LOC113524711
LOC113524722 other upstream 266928 19472020 ~ 19473976 (-) True LOC113524722
TU353447 other upstream 385867 19590959 ~ 19591437 (-) True G298475

Expression Profile