si:dkey-177p2.6 (LOC108257909)


Basic Information

Item Value
gene id si:dkey-177p2.6
gene name LOC108257909
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 19221008 ~ 19230373 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026948156.2
tttttcccctggagcttctctctctctctctcacacacacacactcggaacAAGTTCGGTGTTCGTTGCTGTTCCGGTTCTGACCGGCTCCAGGAAGAATGTTTGAACTGTCTTTAGCTATAACTCACAAGTTATAGGAATTCTGGTTAAGGATGTAGCGAGTTATCGAAACCCTCCTGCTGATTAGTGTTACTTTCACAGCTAGCGTAtaatgctaactagctgagtTTAATTCATCGGAAGTTTTTATATCGCGAGTAAACCTGGTTTAAGGAAACATTATGGTATGGGACAAAGCGAGATTTTATCACTGAATGCGTCCATGAAAGGTAAAGCCACTTCTGTGTGTCGACTGGATGTGGATTCTGTGCTGAAGAAGGAAGTTGAAGCCGGCCAAGGAGATGCCCTTTCCTCAGCGAGGTTCGGTCTGGGCCGTGGGGTGAAGCGTAAACTGAGCGAGTGCGAGGAGTCTGCGCTGGATCTCCCGTATCCGCAGCAGAGGCAGCTGGTGCTGGATCTGTGCCTGGACAAACTGCAGAGCTGCCAGCGTCGTGCCGAGCCCAGCCTTCACCGCTCGGTGCTGCTGGCCAACACTCTGCGCCAGATCCAGCAGGAGATGAGGCTGGAGGGTGGAGACGCTCTTCCTCACGCTTCACCTTCTCCGTTTCCTCCACCCACCCCGCGCCACGTCCCCGAACTCCCGCCTGCATCTGTAGACTCTTCACTTCTTCTTCTGTCTGGACCTGtgtccacatcatcatcatcctcgtcatcatcatcgtcatcatcatcatcatcatcgacGCTCGGTGAGGACGTCGAAGACCGCGTCGAGAGTAAACCGCCTTCCCCGGCGCTCTCGGACGAGGCGGACGCGGACGCGAAGACGCCGGATTCTCTGTTCAGCATGTTCGAGATCACGAATTCCACCAGCTACCTGACGGACCTGCCGCTCGACGACATCTTCGAGGACATCGACACGTCCATGTACGACTCGTCGGAAATCTCGGTCCTGGCGTTTTCCGCGCCGAGAGAAGACGGGCTGAAGAACCTGTCGAACCTGCAGCTCTGCCTGGCTGACCTCAGCGACCTCGACCACATCATGGACATCCTGGTGCGCTCGTGATCCTCACGCACCCTCAAGCTCAAGCCTCAAGCTCAAGCCTCAAGCTCAAGCTCAAGCCATCCTGATATTTACACTG

Function

NR:

description
Transposable element Tcb2 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026948156.2 True 1202 mRNA 0.54 2 19221008 19230373

Neighbor

gene id symbol gene type direction distance location
ahsa1a LOC108257911 coding downstream 7057 19207134 ~ 19213951 (-)
sel1l sel1l,LOC107721334,LOC107659197,LOC107602349 coding downstream 15916 19186674 ~ 19205092 (-)
si:dkey-177p2.18 LOC108257913,LOC107721335,LOC108411318 coding downstream 37393 19171017 ~ 19183615 (-)
chga chga coding downstream 57433 19139086 ~ 19163575 (-)
tmem251 tmem251 coding downstream 127601 19089576 ~ 19093407 (-)
cdca4 cdca4 coding upstream 1822 19232195 ~ 19239317 (-)
LOC113547697 NA coding upstream 35454 19265827 ~ 19267009 (-)
LOC113547703 NA coding upstream 47618 19277991 ~ 19298028 (-)
LOC113547659 NA coding upstream 84354 19314727 ~ 19321490 (-)
LOC113524709 nitr1,LOC108261534 coding upstream 127405 19357778 ~ 19359850 (-)
G298350 NA non-coding downstream 1327 19219117 ~ 19219681 (-)
G298349 NA non-coding downstream 3769 19216638 ~ 19217239 (-)
G298309 NA non-coding downstream 132353 19088101 ~ 19088655 (-)
G298286 NA non-coding downstream 154076 19002340 ~ 19066932 (-)
G298243 NA non-coding downstream 390717 18829534 ~ 18830291 (-)
G298400 NA non-coding upstream 95124 19325497 ~ 19325707 (-)
G298436 LOC108261089,LOC108262065 non-coding upstream 127697 19358070 ~ 19567558 (-)
G298444 NA non-coding upstream 147292 19377665 ~ 19542761 (-)
G298449 LOC108257688 non-coding upstream 179451 19409824 ~ 19413934 (-)
LOC117599713 NA non-coding upstream 596620 19826993 ~ 19827924 (-)
ubr7 LOC108257828,LOC108411326 other downstream 137497 19070460 ~ 19083511 (-)
dpf3 dpf3,LOC108257599,LOC108424513,LOC107659173,LOC107721322,LOC107668213,LOC107562702,LOC107602065,LOC107756570 other downstream 1115015 18072545 ~ 18105993 (-)
acot20 LOC108257587,LOC108257591 other downstream 1505736 17707286 ~ 17715272 (-)
esr1 esr1 other downstream 1714350 17485584 ~ 17506658 (-)
gtf2h5 gtf2h5,tf2h5,LOC107721375,LOC107659223 other downstream 1984879 17233977 ~ 17236129 (-)
LOC113525604 LOC108258223 other upstream 144400 19374773 ~ 19410374 (-)
LOC113524711 NA other upstream 198818 19429191 ~ 19451604 (-)
LOC113524722 NA other upstream 241647 19472020 ~ 19473976 (-)
G298475 NA other upstream 360586 19590959 ~ 19591437 (-)
G298543 LOC108261534 other upstream 653787 19884160 ~ 19940999 (-)

Expression


Co-expression Network