LOC113532136 (LOC108257755)


Basic Information

Item Value
gene id LOC113532136
gene name LOC108257755
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 16809878 ~ 16812493 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923321.2
agagagagaaacaaggaagagagacagagatacacacacagagaaggaagagagacagagacagaagtgagagagaaacaaggaagagaaaagagagagagagagagatggaggacaCTTCCTGCACCCCACCAAACTTCTCCTGGGTGGAGGTGAATAAGGTGGCAGGACTGGCCTGGCCCTCCAGTCCAGCTCATTACCGCTTCTTACTGGATAATGGGATTAAACacctggtgtgtttgtgtgaatccAAACCGCCGGCTTACGAGAGCTTTCCGGATCTCACACTGCACCACATCGCCATGGTGGACTTCACTCCACCCAGTCTGAGTCAAATTCAGACCTTTATCTCTGTCACTGAACACGCCAACACAGGACAGGCGGTTGCGGTGCACTGTAAACACGGCCTCGGCCGCACAGGAACCATGCTGGCCTGCTACCTGGTGAAGACGAGGAAGATCTCCGGAGCGGAGGCGATTAAAATGATCCGATCACTTCGTCCGGGATCCATAGAGACGCGCGAGCAGGAGAGAGCCGTGCTGGAGTTTCAGCAGTACCTCAACCCAAAGACTGCTCTGTAAACCCTGGGAAACAAACACCAACCTGAATCCAGGCACAAAGCTTGTGGTTGTGTTCAGTCTTTTAGAAGACGTCTTATGATGTCTGATTGTGTTGGCTAACTCCGTGATTCAGACCTTGCATTTTCCAAAGCAGTGACGCATCTTAACATCAGAGTACACTGCTACGAGTTATCACTCAGAAATACACCCCTTTCTCCAccccaattaaaaaaaatgacagatcaGTGTATGAATcaagaatgattgacagttgcataggtcaactctctgatattaactgaccctgtgaaagccccgcccccttcctccaTCTTACGTTCGTCTCGTTTTCTCAAATGCTGCCTTTAAGTCTTATCGGAAATATCGTAATTACAAGGTGAGAGCACTTGAATGCGATCACGTCATAATTTCAACTCAGGAACTCGTGTTTTGCTATAAACCCCTACTTTCAGAGTTTGGGGCGTGTCAGTAACAAAAAGTCGTCGTAGCCGTCAGTACGAATTTGATGGTAAGATGTCAGTGGTAATTTTGCATGTTAACTGTTCAgtccttcattttctttcagtagGTCAAAATAAACTTCTTGCTGCTGATGaagcaaaaaatacaaataaataaaacccactTGGACACACACTATGCTGTAATCAGCAGCTTCAAACTCATACGCATGAACTTCCGAGGGCTTGacatagattttatttcacattaacgaACTATgaattttctgttaaataattttttttaatcaataaacaatttctataa

Function

GO:

id name namespace
GO:0035335 peptidyl-tyrosine dephosphorylation biological_process
GO:0008138 protein tyrosine/serine/threonine phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923321.2 True 1349 mRNA 0.45 2 16809878 16812493

Neighbor

gene id symbol gene type direction distance location
LOC113531776 unc93a,LOC108257541,LOC108257560 coding downstream 165121 16625619 ~ 16644757 (-)
ttll2 ttll2 coding downstream 187733 16618474 ~ 16622145 (-)
gpr31 gpr31 coding downstream 209307 16597116 ~ 16600571 (-)
plg plg coding downstream 221358 16570413 ~ 16588520 (-)
trnal-cag_16 NA coding downstream 302965 16506831 ~ 16506913 (-)
moxd1l NA coding upstream 6188 16818681 ~ 16836599 (-)
si:ch211-203k16.3 LOC108257753,LOC108424433,LOC107603096,LOC107549701,LOC107697150 coding upstream 69344 16881837 ~ 16909398 (-)
efr3bb efr3b,efr3bb,LOC108424480,LOC107678842,LOC107549699 coding upstream 101212 16913705 ~ 16961617 (-)
LOC113531763 LOC102294303 coding upstream 178059 16990552 ~ 16991727 (-)
mixl1 NA coding upstream 210642 17023135 ~ 17026173 (-)
G296965 NA non-coding downstream 2556 16741241 ~ 16807322 (-)
G296835 NA non-coding downstream 195107 16614540 ~ 16614771 (-)
G296823 NA non-coding downstream 217758 16591913 ~ 16592120 (-)
LOC117599726 NA non-coding downstream 467808 16339082 ~ 16342070 (-)
G296734 NA non-coding downstream 644033 16157334 ~ 16165845 (-)
G296993 NA non-coding upstream 32622 16845115 ~ 16846008 (-)
G296994 NA non-coding upstream 33628 16846121 ~ 16847214 (-)
G297011 NA non-coding upstream 66903 16879396 ~ 16881821 (-)
G297044 NA non-coding upstream 236281 17048774 ~ 17048993 (-)
G297045 NA non-coding upstream 237902 17050395 ~ 17050639 (-)
G296802 igf2r other downstream 251951 16555103 ~ 16557927 (-)
pln NA other downstream 667262 16134134 ~ 16142616 (-)
G296263 cx32,LOC108257940,LOC108424424 other downstream 1327517 15463081 ~ 15482361 (-)
pkib pkib other downstream 1505581 15273854 ~ 15304297 (-)
pex7 pex7,LOC107727680,LOC107676274 other downstream 2037843 14726401 ~ 14772035 (-)
ttc32 ttc32 other upstream 230673 17043166 ~ 17046831 (-)
gtf2h5 gtf2h5,tf2h5,LOC107721375,LOC107659223 other upstream 421484 17233977 ~ 17236129 (-)
esr1 esr1 other upstream 673091 17485584 ~ 17506658 (-)
acot20 LOC108257587,LOC108257591 other upstream 894793 17707286 ~ 17715272 (-)
dpf3 dpf3,LOC108257599,LOC108424513,LOC107659173,LOC107721322,LOC107668213,LOC107562702,LOC107602065,LOC107756570 other upstream 1260052 18072545 ~ 18105993 (-)

Expression


Co-expression Network