Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026923321.2 |
| length | 1349 |
| RNA type | mRNA |
| GC content | 0.45 |
| exon number | 2 |
| gene id | LOC113532136 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047613.1 |
| NCBI id | CM018559.1 |
| chromosome length | 22090854 |
| location | 16809878 ~ 16812493 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0035335 | peptidyl-tyrosine dephosphorylation | biological_process |
| GO:0008138 | protein tyrosine/serine/threonine phosphatase activity | molecular_function |
| GO:0004725 | protein tyrosine phosphatase activity | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU351652 | lncRNA | downstream | 2556 | 16741241 ~ 16807322 (-) | True | G296965 |
| TU351493 | lncRNA | downstream | 195107 | 16614540 ~ 16614771 (-) | True | G296835 |
| TU351480 | lncRNA | downstream | 217758 | 16591913 ~ 16592120 (-) | True | G296823 |
| XR_004580104.1 | lncRNA | downstream | 467808 | 16339082 ~ 16342070 (-) | True | LOC117599726 |
| TU351367 | lncRNA | downstream | 644033 | 16157334 ~ 16165845 (-) | True | G296734 |
| TU351686 | lncRNA | upstream | 32622 | 16845115 ~ 16846008 (-) | True | G296993 |
| TU351687 | lncRNA | upstream | 33628 | 16846121 ~ 16847214 (-) | True | G296994 |
| TU351706 | lncRNA | upstream | 66903 | 16879396 ~ 16881821 (-) | False | G297011 |
| TU351709 | lncRNA | upstream | 66903 | 16879396 ~ 16881821 (-) | True | G297011 |
| TU351744 | lncRNA | upstream | 236281 | 17048774 ~ 17048993 (-) | True | G297044 |
| XM_034313471.1 | mRNA | downstream | 165121 | 16625619 ~ 16644757 (-) | True | LOC113531776 |
| XM_026922675.2 | mRNA | downstream | 165374 | 16625619 ~ 16644504 (-) | False | LOC113531776 |
| XM_026923659.2 | mRNA | downstream | 187733 | 16618474 ~ 16622145 (-) | True | ttll2 |
| XM_034313493.1 | mRNA | downstream | 189020 | 16618474 ~ 16620858 (-) | False | ttll2 |
| XM_026922778.2 | mRNA | downstream | 209307 | 16597116 ~ 16600571 (-) | True | gpr31 |
| XM_034313914.1 | mRNA | upstream | 6188 | 16818681 ~ 16836599 (-) | True | moxd1l |
| XM_034313630.1 | mRNA | upstream | 69344 | 16881837 ~ 16909398 (-) | True | si:ch211-203k16.3 |
| XM_034313728.1 | mRNA | upstream | 101212 | 16913705 ~ 16961616 (-) | True | efr3bb |
| XM_026923095.2 | mRNA | upstream | 105072 | 16917565 ~ 16961617 (-) | False | efr3bb |
| XM_034313729.1 | mRNA | upstream | 105072 | 16917565 ~ 16961617 (-) | False | efr3bb |
| TU351456 | other | downstream | 251951 | 16555103 ~ 16557927 (-) | False | G296802 |
| TU351457 | other | downstream | 251951 | 16555476 ~ 16557927 (-) | True | G296802 |
| trnal-cag_16 | other | downstream | 302965 | 16506831 ~ 16506913 (-) | True | trnal-cag_16 |
| XR_003403300.2 | other | downstream | 667274 | 16134167 ~ 16142604 (-) | False | pln |
| trnav-cac_21 | other | downstream | 1030579 | 15779227 ~ 15779299 (-) | True | trnav-cac_21 |
| TU351727 | other | upstream | 230820 | 17043313 ~ 17046810 (-) | False | ttc32 |
| TU352481 | other | upstream | 894793 | 17707286 ~ 17715244 (-) | False | acot20 |
| XR_003404857.2 | other | upstream | 1262869 | 18075362 ~ 18105993 (-) | False | dpf3 |
| TU353207 | other | upstream | 2265511 | 19078004 ~ 19083465 (-) | False | ubr7 |
| LOC113547697 | other | upstream | 2453334 | 19265827 ~ 19267009 (-) | True | LOC113547697 |
