RNA id: XM_034313728.1


Basic Information

Item Value
RNA id XM_034313728.1
length 6738
RNA type mRNA
GC content 0.42
exon number 24
gene id efr3bb
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 16913705 ~ 16961617 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gttttgttttgagcaGAGTTGGCTCTATTTTCATGGCCATGTTGTCTAATTCATTTAAAAGATGGTCTAACTTTGACTGTTGATAAAATGTTGGActtattttcttcctttccagaaaaaaaaagaaagaatgaagagtgagagagataaaaCTGCTTGAGAGATGTCAGGGTGTCCATGCTGAGTGGGAGCCTGAGGGAGGAGAGCTGAAAGCCGGGCAGGGTGATGAGAGCAGGGGGGTCTCAGGTCTCAGGTCTCTGGTGGAGAACTTTATAACGCCTGGATGTCATCCTGGGACTTTCCTGCTGTGAATGAACCGAAGGGAAGCGCACGAACGGCGGGTAGAGCGCCTTCCAACAGGAGCGGCAGCAGCCAAGCTGGTGTGCAGTAGTCCAAGCCGGGAAACGGTGGTGGAGAAGTAATAATGGCAGgggtGTGCGGTTGTTGCTGTGGGGCTTTCAGGCCCCGGTACAAGAGGCTTGTTGACAACATATTTCCTGAAGATCCGGAGgacgGGTTGGTGAAGGCCAACATGGAGAAGCTGACGTTCTACGCTCTGTCTGCTCCAGAGAAGCTGGACCGAATAGGAGCCTACCTGTCTGAGAGACTGTGCCGCGATGTGGCCAGACACAGATACGGTTATGTGTGTATCGCGATGGAGGCTCTGGATCAGCTGCTGATGGCGTGCCACTGTCAGAGCATTAACCTGTTTGTGGAGAGTTTCTTAAAGATGGTGCGCAAGCTGCTGGAGGCCGACAAGCCCAACCTGCAGATACTGGGAACCAACTCGTTTGTCAAGTTCGCCAACATTGAAGAGGACACGCCCTCGTACCATCGCAGTTATGATTTCTTTGTGTCACGCTTTAGTGAGATGTGCCACTCCAACTTTGAGGATCCGGATATCCGCACCAAAATCCGCATGGCTGGTATAAAAGGTCTGCAGGGAGTGGTGAGGAAGACAGTCAACGATGAATTGCAGGCGAACATCTGGGATCCGCAGCACATGGACAAGATCGTACCCTCTCTGCTGTTTAACCTGCAGTCTGGAGAAGGCACGGAGAGtcgtTCCCCCTCTCCACTGCAGGCCActgagaaggagaaggaaagccCAGCTGAGCTGACAGAGCGCTGTTTTCGGGAGCTGCTGGGCCGCGCCGCCTACGGCAACATCAAGAACGCAGTCACTCCCGTCCTCATGCATCTTGATAATCACTCTCTGTGGGAAGGCAAAACATTTGCAGTGCGCTGCTTTAAGATCATCATGTACTCAATTCAGTCTCAGCACTCTCACCTGGTTATCCAGCAGCTCCTGGGTCACCTGGACGCTAACAGTAAGACCTCGGCTACGGTGCGCGCTGGGATCGTGGAGGTTCTCCTGGAGGCAGCTGCTATAGCAGCCAGCGGATCTGTAGGCCCCACTGTGCTGGAGGTGTTTAACACACTCCTCAGGCATCTGAAGCTCAGTGTGGATTACGAGCTCAGCGGATTTTATGATGCCACCACCACAGGCAACAAAACCGTCAACGAGCACGAAGAGAGGCAGCTCCAAGAAGCTGTCATAAAAACCATagGTTCCTTTGCCAGCACTCTGCCTACGTACCAGCGCTCTGAGGTGATGCTCTTCATCATGGGGAAGATCCCGATTCCTGGACTGCACCTTACACTGCCACCCACAGACTCTGGGTCTGAGGGTGACAGGATGATTCAGGTCATGTTGCTGAAGTCTCTAAGACAGGTGACGTGTGGCTTCCAGAGCACGAACATGCTAACGGCTCTGCCCAGCTCGTTCCTGGACCCGCTCCTGTCCTTCGCACTGCTGGAGGACGCGCACATCCGCCTGCTCGTCCTCGAAATCCTCGTCAGCCTCATCGATCGCCATGACAACCTCCCTAAGTTCTCCACCGTCAGCATCATCTCGGACATTTCTGTCCTTAAACTCAAGATGGAGAAGTGTTCCCGTCAGGATAACCTCTTCATGAAGAAGcatGCCCAGCAGCTCTACAGACACATTTACCTGTCGTGTAAGGAGCAGAGCAGTGTGCAGCCGCACTACGAGATGCTCTACGCTCTCCTCGCGCTGATCAGCATGGAGCTTGCTAACgaggaggtggtggtggatcTCATTCGCCTCGCTCTGGCCCTGCAGGACTTGGCTTTAGTCAGCGAGGAGACGTTGCCGGTGTTTAACCGTTGTGCTGTTCACGCTCTCTGCGCTGCCTACCTCAACCTCATCTGCCAGCTCACCACCCTGCCCACCTTCTGCCAGCACGTCCACGAGGTGATCGAGATGAGACAGAAGGAATCTCCATTTCTTTTGCCAGAAGATGTCTTCATTGAAAGTCCAAAGGTTCCGGAGACGCTGGAGAAGCCAGCAGGAGAAGTGCTGTTCCAGCAGGCTAAGATCGCTGAGGTGCTGGGAGGAAGTGGCTACAACACCGAGAGACTCGCCACACCTTACATCCCTCAGTTCACAGatgaagACAGGCTGTCGAAGAGAAAAAGTATTGGAGAAACGATCTCTCTCCAGGTGGAGGTCGAGTCCAGAAACAGTCCAGAGAAAGAGGagAGAACACCAGCTGAGGAAATCACATTCGAAGCACTTAAGAACGCCATAGtggaCAGTGTAGGGATGGAGGAGCAGGAGCGAGAGCGGAGGAGGCAGGTGGTGGAGAAGTTTCAGAAGGCCCCGTTCGAGGAGATCGCCGCACACTGTGGAGCCAGAGCCACAATGTTACAGAGCAAACTCAGTCAGATCTTCGAAATCACAATCAGGCCTCCTCCCAGTCCATCAGGCACCATCACAGCGAGCTACGGCCAAACCCAGACCCGCTCCGTCCCCATCTACGAGATGAAGTTCcctgacctgtgtgtgtattagcaCAGAGTGAAGGAGCAGCTCGGACAACGGAGcagcgatgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtatgtacagGAGGTATTACCCAAACATCTCCGTTCTTTATCATCGCAAGCAAACCTCCAGCGTGTTGTATTTGCACTGTGACTGACACTGACGCTGACACGACCACACAGCAAATACGAACTCTTTTTAAATGCATCATGAAGAGAAAAGCCTGCGAGGCGCCATTACTTTTACTCCACAGCCTCCGCTAGGATCCGCTTGTGTCGTCTGCCATGTTAAACGTTTTGTCTCGTGGCCTGAATTCAGCCGgggtatattttttaaagcagaagTGCATGTGCTGTCGTCCTCTAATGCCAGCTAGTTTTATTTTAGCTCTTGTTTTAAGTAGTAGTGCTGTTTTATGACGCTGTTAGTGCGTTAAGTTAAGGAAAGTATTTTTAGAAAATGGCTTAGCCGGTTTTGTTAAATTAACCATTTTTAACACGTATGTCTTTATTGGTGctacttttgtttcatttcgtTTTTTAACAATTTACTGACCTTTTTGTGTGGAAAACTCAGCCACTTTACTGTAAACCGGACATATATTCAGAGAAAATTCACACCGTTTGCGTGAGATCTTTTCAAAATCATAAATCCTTTTCTTGAGATTTAGGCACAGAAATGATCTAAATACTAAAAATTCTTAGGTTTCTGGGTTTGTGCAGATGGCAGATTAGCACTTTGCATTATTTAGCTATAGATATGCATGAGCATATCTGTTTTGGTGTATAcagggctaaaaaaaaaaaaaaaatgcaattgcaCTGGAAAAAATTCCCATCACCTACATAATAGGCTCTGtgaatgtgattttttattttttattttgctgttcaTTTTAAAGCGTCCATAAGCAACTTTCTTTATGTCTAGCATAGCATACAACAAGACAATAAGTTATATCTAATGATCTCAAAACACAATGACTGTAAATATATGTGTGGATATGAAGAGAAATTTTAGTTTTAGACTGCACTGACTTTTCTAACATCCAGCTAGGGTGAGTACAGGTGACGGCGTGTATGCGGTGCTCACCCGTGAAGAACTAACCAGCATGAGATTACCACCATCACAGAAATTTACAACAAGAACCACGGTTTATGAGCTTCTGCAAGCTCCTGGGGACATGATTAAGATAGAACACCCTGATACAGTGGACACTCGTCTTCCCCTTCTGGTCACGTCTCGGCTTGGAACGTGTCCCAAACGTGTCGTTCGAGTCACACGAGTGCATGTTTCGACATTACTGCAATTAATCAACAAGATGGAGAGAACGTGGTTGATTTTTCGGATGACGTACATACACggaaaacgttttttttttgttatatttttctattGTCGTGCGTTTGTCAGTGGTGGTTGTCTTCAGgctgtttttaaaaagctgaaagAATTCTTTTCTCTGTGGCGTTGAAGTATAATGTCGATCGCTCctgattggttaaaaaaaaaagtgtcgtTTTATTGTGCGTATGATTGTGCGAGTATTTTATCGCCGTGACAACGCGACTTCACGTGGTCGTCTGGTGAACACGTCCTCGTTGCTCATGTCTCCGACGCTCCTGTGTGTCATGTTTTCTACGTGTTTGTTTTAAGAATCTTACAAATGAAGCCATGATCGCAAACACTGAAGGCGACACCGATTGTCGTTctaactttttttgttgttgttgttgttgttgttgttatttagtCATGGGTCAAAACTCGAAATCTCAACATACATAAGAGCTGCTTAGacttaaatttaataaatctgATACATTTTACACTACACAATTATATAGTTACTTACAGAATGGTAAACAAACGTGGCCtgcttgtttattattttgtaattgtgtattgtgtgtttgtgatggtaggatttggatttgaatttttttttgtcaattcaTTTGATATTGCACGTGAAAGTAAACGAAATATCCGCCTATGTTTTAATTGGTCAGATTTGTTCTAAGCTTAAAACTAAGCTCAGCTTAAAATTCCATTTCACcacaaaatatttgtttcaaaatgtttattataattgaTGTCACACTTCAGCTTTGATATTagtcatatattattattattatatttcaagtTTGTCAAATTCAGAGGTTTATTCAAGGCTACATTTGGGCATGTGCAAATTTAAGAGTTATTGTAAGGAATGAGAAATGTGGCACtataatctgaatttaaaatttacacattGGAATTTTTATGCCTTTATTTGAATTTCTAAGTGATGTTCTGTTGTTgaattagattaaattaaaattgtattcCATGGCTTAAATCAGGTTTCAAATTCAATTTGAATGTGTAGAAAATTCTATTTCTATTGTGTTCACTGGCACATTCACTGTTCACTGAAATTCAGTTTCAGAAATTCAGTTCTTCCAATTCAGATTCAAATTTTGAAAACACTACATTATTGGCTCATTGTGGCTGAAATGGCAGCAATCAAATCTgtgctaaattttttttttttttttttttttttggctggtgTAGTGTTTCAAAAATGTTGAATGGAATTTGAAATGGATTGTGCCtccaaaagtttttttgtttattataaaattgaattttttgttttttgccacTCAGACTGTAGTGGCacatttctcatttcatttcaggaaaGGACTGGGTTTCCAGAAGATGGATCtgaattgtatttatttattgatctgACTTTGCATAATGGTgccaataaattaattataataaacgTGCTGTACAatttaaatgcagaaaaattcAGATTTACAAAATTTCAAGTCTAAATTCTAGTAGCACAAATACTCCATATCAGTCACTGTAATAAAAACGGTTTATGGAGTCTGAATTCtgaaattagaaaatttaatttaaatgcgAGAATCTGAATTttaatgctgttatttaaaatttttgtcaTGCCATCTGAGAAAGAATTCTGAACTGAGCAtttgaaatctaaaatgtaatACTCATATGATCGATTTCTAAAGACCAAACGGTTCAATTTTAGATTTGTTAACTTGCAGGCAAAAGCCAAGATAAAATACGCTTCAAAAATAAGATTTATTTGGAAAATGGAAGAGAtgagttctgttttttttttgtttttttttgggctgCTTTTGCCTGCAAGTTACACGAATGTTACTTtgaaagcaaaatgaaaaatgtgaattaatAGCAGGTctgaatgctttttaaaaactgattaaatGCGTACTTCATTTTGAATTTCAAATGTTCAGTCACACACTCTTGAACGTgaaattcagttttaaattttcGCTCTTTTCTAAACCACaaaattcaatttcagtttGGAAATTTAATTTCAGATGGTGtgaaacaaaatttaaaataaattctgatTGAAATAAAATTTCCTAATGACATGATTCAAACTCCATAGCAACTTAAAATAAACTGGATTCAGTGgaattttttaatctattattcTTATTACACTGCTAttaacagtggtgtgtgttcttttatttttatttttatttgttaaaattgtGACAGTTTTTTTGACGGCATGAAAACTTCACAAGACCTTTGCTCACTTCATGGTATTCCTGGAAACCTGGGAAGTTGAGGAATAAATCTGGGAAATGGATGAAAATATTCATGTCGCACTGAAACAAAGCAACACGGGAAAGACGTGTTGCGTATATTTTGCCGTGTAAATGTTTCAGGTGGAAAGTGAAGCTCATGTCTGTGTCACGTCTCTGAGCTTGTACACATATAGTCTGTTTTTACATGTCAGTACTACAGCTGGTCAATAAAACATGTTCAGTGATGA

Function

GO: NA

KEGG:

id description
K21842 EFR3; protein EFR3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU351706 lncRNA downstream 31884 16879396 ~ 16881821 (-) False G297011
TU351709 lncRNA downstream 31884 16879396 ~ 16881821 (-) True G297011
TU351687 lncRNA downstream 66491 16846121 ~ 16847214 (-) True G296994
TU351686 lncRNA downstream 67697 16845115 ~ 16846008 (-) True G296993
TU351652 lncRNA downstream 106383 16741241 ~ 16807322 (-) True G296965
TU351744 lncRNA upstream 87158 17048774 ~ 17048993 (-) True G297044
TU351745 lncRNA upstream 88779 17050395 ~ 17050639 (-) True G297045
TU351749 lncRNA upstream 92748 17054364 ~ 17055003 (-) True G297049
TU351750 lncRNA upstream 102550 17064166 ~ 17064385 (-) True G297050
TU351752 lncRNA upstream 104066 17065682 ~ 17066428 (-) True G297052
XM_034313630.1 mRNA downstream 4307 16881837 ~ 16909398 (-) True si:ch211-203k16.3
XM_034313914.1 mRNA downstream 77106 16818681 ~ 16836599 (-) True moxd1l
XM_026923321.2 mRNA downstream 101212 16809878 ~ 16812493 (-) True LOC113532136
XM_034313471.1 mRNA downstream 268948 16625619 ~ 16644757 (-) True LOC113531776
XM_026922675.2 mRNA downstream 269201 16625619 ~ 16644504 (-) False LOC113531776
XM_034313672.1 mRNA upstream 28936 16990552 ~ 16991727 (-) True LOC113531763
XM_026923667.2 mRNA upstream 61519 17023135 ~ 17026173 (-) True mixl1
XM_026922729.2 mRNA upstream 68738 17030354 ~ 17041447 (-) True zpax1
XM_026923331.2 mRNA upstream 81550 17043166 ~ 17046831 (-) True ttc32
XM_034313848.1 mRNA upstream 107809 17069425 ~ 17080809 (-) True laptm4a
TU351456 other downstream 355778 16555103 ~ 16557927 (-) False G296802
TU351457 other downstream 355778 16555476 ~ 16557927 (-) True G296802
trnal-cag_16 other downstream 406792 16506831 ~ 16506913 (-) True trnal-cag_16
XR_003403300.2 other downstream 771101 16134167 ~ 16142604 (-) False pln
trnav-cac_21 other downstream 1134406 15779227 ~ 15779299 (-) True trnav-cac_21
TU351727 other upstream 81697 17043313 ~ 17046810 (-) False ttc32
TU352481 other upstream 745670 17707286 ~ 17715244 (-) False acot20
XR_003404857.2 other upstream 1113746 18075362 ~ 18105993 (-) False dpf3
TU353207 other upstream 2116388 19078004 ~ 19083465 (-) False ubr7
LOC113547697 other upstream 2304211 19265827 ~ 19267009 (-) True LOC113547697

Expression Profile