Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_003403302.2 |
| length | 794 |
| lncRNA type | inter_gene |
| GC content | 0.51 |
| exon number | 4 |
| gene id | LOC113531886 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047613.1 |
| NCBI id | CM018559.1 |
| chromosome length | 22090854 |
| location | 17415966 ~ 17421452 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0048738 | cardiac muscle tissue development | biological_process |
| GO:0072359 | circulatory system development | biological_process |
| GO:0007507 | heart development | biological_process |
| GO:0060537 | muscle tissue development | biological_process |
| GO:0014706 | striated muscle tissue development | biological_process |
| GO:0043292 | contractile fiber | cellular_component |
| GO:0044449 | obsolete contractile fiber part | cellular_component |
| GO:0030016 | myofibril | cellular_component |
| GO:0030017 | sarcomere | cellular_component |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU352043 | lncRNA | downstream | 179855 | 17233977 ~ 17236111 (-) | True | gtf2h5 |
| TU351753 | lncRNA | downstream | 333852 | 17081872 ~ 17082114 (-) | True | G297053 |
| TU351752 | lncRNA | downstream | 349538 | 17065682 ~ 17066428 (-) | True | G297052 |
| TU351750 | lncRNA | downstream | 351581 | 17064166 ~ 17064385 (-) | True | G297050 |
| TU351749 | lncRNA | downstream | 360963 | 17054364 ~ 17055003 (-) | True | G297049 |
| TU352197 | lncRNA | upstream | 60872 | 17482324 ~ 17482887 (-) | True | G297442 |
| TU352201 | lncRNA | upstream | 84454 | 17505906 ~ 17506658 (-) | False | esr1 |
| TU352232 | lncRNA | upstream | 234773 | 17656225 ~ 17656811 (-) | True | G297465 |
| TU352485 | lncRNA | upstream | 284148 | 17705600 ~ 17760410 (-) | True | G297670 |
| TU352484 | lncRNA | upstream | 313171 | 17734623 ~ 17760410 (-) | False | G297670 |
| XM_026922848.2 | mRNA | downstream | 156100 | 17256381 ~ 17259866 (-) | True | myct1a |
| XM_034313421.1 | mRNA | downstream | 167045 | 17237824 ~ 17248921 (-) | True | serac1 |
| XM_026923294.2 | mRNA | downstream | 179837 | 17234679 ~ 17236129 (-) | False | gtf2h5 |
| XM_034313484.1 | mRNA | downstream | 179953 | 17234679 ~ 17236013 (-) | False | gtf2h5 |
| XM_034313483.1 | mRNA | downstream | 180719 | 17234679 ~ 17235247 (-) | False | gtf2h5 |
| XM_026923362.2 | mRNA | upstream | 64132 | 17485584 ~ 17506182 (-) | True | esr1 |
| XM_026922726.2 | mRNA | upstream | 90995 | 17512447 ~ 17520711 (-) | True | armt1 |
| XM_026923781.2 | mRNA | upstream | 117458 | 17538910 ~ 17600760 (-) | True | akap12b |
| XM_026923693.2 | mRNA | upstream | 187139 | 17608591 ~ 17666128 (-) | True | mthfd1l |
| XM_026923490.2 | mRNA | upstream | 262545 | 17683997 ~ 17699560 (-) | True | gpr176 |
| TU351727 | other | downstream | 369156 | 17043313 ~ 17046810 (-) | False | ttc32 |
| TU351456 | other | downstream | 858039 | 16555103 ~ 16557927 (-) | False | G296802 |
| TU351457 | other | downstream | 858039 | 16555476 ~ 16557927 (-) | True | G296802 |
| trnal-cag_16 | other | downstream | 909053 | 16506831 ~ 16506913 (-) | True | trnal-cag_16 |
| XR_003403300.2 | other | downstream | 1273362 | 16134167 ~ 16142604 (-) | False | pln |
| TU352481 | other | upstream | 285834 | 17707286 ~ 17715244 (-) | False | acot20 |
| XR_003404857.2 | other | upstream | 653910 | 18075362 ~ 18105993 (-) | False | dpf3 |
| TU353207 | other | upstream | 1656552 | 19078004 ~ 19083465 (-) | False | ubr7 |
| LOC113547697 | other | upstream | 1844375 | 19265827 ~ 19267009 (-) | True | LOC113547697 |
| TU353415 | other | upstream | 1969547 | 19390999 ~ 19391487 (-) | False | LOC113525604 |
