Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026923294.2 |
| length | 375 |
| RNA type | mRNA |
| GC content | 0.46 |
| exon number | 3 |
| gene id | gtf2h5 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047613.1 |
| NCBI id | CM018559.1 |
| chromosome length | 22090854 |
| location | 17233977 ~ 17236129 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0006289 | nucleotide-excision repair | biological_process |
| GO:0000439 | transcription factor TFIIH core complex | cellular_component |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU351753 | lncRNA | downstream | 152565 | 17081872 ~ 17082114 (-) | True | G297053 |
| TU351752 | lncRNA | downstream | 168251 | 17065682 ~ 17066428 (-) | True | G297052 |
| TU351750 | lncRNA | downstream | 170294 | 17064166 ~ 17064385 (-) | True | G297050 |
| TU351749 | lncRNA | downstream | 179676 | 17054364 ~ 17055003 (-) | True | G297049 |
| TU351745 | lncRNA | downstream | 184040 | 17050395 ~ 17050639 (-) | True | G297045 |
| XR_003403302.2 | lncRNA | upstream | 179837 | 17415966 ~ 17421452 (-) | True | LOC113531886 |
| TU352197 | lncRNA | upstream | 246195 | 17482324 ~ 17482887 (-) | True | G297442 |
| TU352201 | lncRNA | upstream | 269777 | 17505906 ~ 17506658 (-) | False | esr1 |
| TU352232 | lncRNA | upstream | 420096 | 17656225 ~ 17656811 (-) | True | G297465 |
| TU352485 | lncRNA | upstream | 469471 | 17705600 ~ 17760410 (-) | True | G297670 |
| XM_026922841.2 | mRNA | downstream | 2581 | 17216213 ~ 17232098 (-) | True | si:dkey-12h9.6 |
| XM_026923789.2 | mRNA | downstream | 41032 | 17168187 ~ 17193647 (-) | True | capn3b |
| XM_026923407.2 | mRNA | downstream | 81724 | 17149788 ~ 17152955 (-) | True | churc1 |
| XM_034313821.1 | mRNA | downstream | 121028 | 17092570 ~ 17113651 (-) | False | mideasa |
| XM_034313421.1 | mRNA | upstream | 1695 | 17237824 ~ 17248921 (-) | True | serac1 |
| XM_026922848.2 | mRNA | upstream | 20252 | 17256381 ~ 17259866 (-) | True | myct1a |
| XM_026923362.2 | mRNA | upstream | 249455 | 17485584 ~ 17506182 (-) | True | esr1 |
| XM_026922726.2 | mRNA | upstream | 276318 | 17512447 ~ 17520711 (-) | True | armt1 |
| XM_026923781.2 | mRNA | upstream | 302781 | 17538910 ~ 17600760 (-) | True | akap12b |
| TU351727 | other | downstream | 187869 | 17043313 ~ 17046810 (-) | False | ttc32 |
| TU351456 | other | downstream | 676752 | 16555103 ~ 16557927 (-) | False | G296802 |
| TU351457 | other | downstream | 676752 | 16555476 ~ 16557927 (-) | True | G296802 |
| trnal-cag_16 | other | downstream | 727766 | 16506831 ~ 16506913 (-) | True | trnal-cag_16 |
| XR_003403300.2 | other | downstream | 1092075 | 16134167 ~ 16142604 (-) | False | pln |
| TU352481 | other | upstream | 471157 | 17707286 ~ 17715244 (-) | False | acot20 |
| XR_003404857.2 | other | upstream | 839233 | 18075362 ~ 18105993 (-) | False | dpf3 |
| TU353207 | other | upstream | 1841875 | 19078004 ~ 19083465 (-) | False | ubr7 |
| LOC113547697 | other | upstream | 2029698 | 19265827 ~ 19267009 (-) | True | LOC113547697 |
| TU353415 | other | upstream | 2154870 | 19390999 ~ 19391487 (-) | False | LOC113525604 |
