si:dkey-12h9.6 (LOC108258171,LOC103045157,LOC108424494,LOC105908978)


Basic Information

Item Value
gene id si:dkey-12h9.6
gene name LOC108258171,LOC103045157,LOC108424494,LOC105908978
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 17216213 ~ 17232098 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922841.2
TGAGGTTAGTGTAGGTGATGTACTATGTAGGGACACTCCTTAGTGCAGGATTGCGCGGTTTGGGATGGAGCCGCGTAGCTGCACCTTTgttgagcagcagcagcagcagcggcggCGTGGAgcatcacgcacacacacgcacacacacgcacacaaagcGTCTTCTCGTCAGGTTGCGGCATCAGTGAGGCCAGTGTGACAGCGCTGTCTCCTCACACGGACACGCAGAGAGCCAGAAGATGAAGAAGCGCTGCCTGGACGTGGCCAAGCTCCGGAAGATGAAGAAGCTCAGACTGACGGAGAAGATTTCAGAAAGCGCGTACTCGTTCCTGAAGTTCATGACCGTGTGGATCGTGGTGCTTTTGGCTGACTTTATTCTCGAGTTCAGACTGGAATACTTGTGGCCTTGCTGGCTCTTCCTCGGCACCGTTTACACCACGTTCCACTGCCACGGCCTGgcCATCTGTATGGTATTTGTGTGTGCTGCCTTTACACTGGATatattctgtttaatttttgtaCCGCTACACTGGCTGTTTTTCGCAGCCAGCACATATGTTTTACTCAACTACATATGGCATACAGagAAGGGTATCTGCCTGTCAACTGTGACTTTATGGATTCTTCTTGTATACACGGAGACCTCGCTCAGGCTGAGAGACCTGAAGAATCCATACGCCAACCTCTCTCACCTCTTTGCTGCACACTGCATTGGCTATCCATTGGTCTACATGGGATTTGATGCAACATGTTACTTCTCCGGCATCTTGAAACTTCGCACACAAAAAGCAGTTCAGAGTGAGAATGACTTGCACATGCATCTCCTTCAACATCCCCTACCTCCGTACACACAGATCTACCCAAAACTCGGGGTGGAAGAATCCAAATGGAGGACCAAACCAGGGCCCATGCAATACCCATGTCAAAACGATGCCATCATATCAGAGGACAAGCAGGACCACGAGGACTGTCTCCAACTCCACAGGCTGCAggggaggacagagagagacacaggggACACCAGGATACGAGAGCCGAACCCTCAGCCCCCAGGATCTAAGCAGCATGGAGCTGAAATGCGGTCAGGTTCAGCGCAGCTTTCCGACGTTCACGAACACCTACCTCACGAGGAGCAAAGCGGGAAAGCTCCGAGAGTCTCTAGAGGTCCACAGGCTAAAGGAGTGCAGAGGAGCTCGGTGAACATCGTAACCAGCAAAGCGGAGAAGAAACTCAAAAACCCAAAAGCCATCGGCTCCAATGGAGACGCAGGAGAACGGAGCGCAAATATCCAGGGTCTTCACAATCCTCATGCTGAGCAGATCTCTAAGTTGGAGCAGGAGATGAGGAAGCTGAAGGTGGAGCTGCAGACGAGCAGACAGAACGAGCAGGAGTTACGCAGTCACATCTGTAACCTCACCAACAGCGAGAACAGCCTGCGGCCTGAAGTCTCGCTGCTCAGACATGCCAATGAACTTCTGCAGAACAAGCTTCAGTATCTGAGTAAATCCAGGCAGAAGGACAAGCAGAGTTGTGCCATGTTGGAGAAGAAAGCCAGAGTGGAGACAGAGAGCAGACTAGCCATAGAAAAACAACTCACAGAAGTCCGGTCCCAGAAATTTGACGAGGCAGCTTTTTTACTACGTAATGCATCAAACAGGCAGGAACACAGTGAGACGCAGCTGTTAAGGAAAAGAGCTAGAGATCTAGACACAGAGTACAAACAGCTACAGCTGGACTATCAGGGGAAAGACAATCGAGTGCTAGCGCTAGAAAAAGAAGTGGAGTCGCTGCAGAAGCTCAGATGTACAGAGCAGGAGGCCGACGCCTTGCTCTCCGCTCTCTCCTCTCTGCAGGATAAAGCTCAGCATTTGGAGTACAACCTGAGCGCAGAGACACGCCTCAAACTGGACCTGTTCTCAGCGCTGGGGGACGCTCGCAGACAGCTGGAGATAGCGCAGGTTAAACTCCTGAAGCAGGACCAGGAGATCAAGGAGATGAAACAGAAGATCGCAGAGGTCATGGCCGTTTCTCCAGGCGTGTCCTACGTGGCTCCACGCTCGACCGTTCCGCAGTACCTCAAGTTCCTCAACTCGGAGCGCTACGTCCTGAACCCGCGAGGGCTCATGTACCAGTGTCTGAAGAAATAATCACATCATCACAGTGAAGGACACAAATGGAaggctttttcctttttcaaaaGCTTTGGATCAGTTTGTCCTGATGATCCGAATAAAGGGGTACACACTGTTGAAGCTTCCCTGACCGGACCGAGAGCCGGCGAGTTTACGGCTCTGAGCCAGAGGTTCTCGAGGACACAAAGCTGATTGTACGTCTGATATGTGGTGCTACAGAAGTAAACAAAGCAACACAGGCTAATTATTTTCGATCCTGAACTCACGTCGTTAAATTACTTCTAAAGTACAGCAGTGGCATTCGGACACATTTTTCCGAGTCTCAGCTGGAGTCAGTGACTATtttcataaaaagaaaaaaggaaatcagGCTCAATGGCTCATGTTGTGCCTCAATACAATATTCAAACAATAAAAAGCCAATACCTAATGTCAgtaatgtgaatataaagtgcTTTGTACGGTTTTGTATTCCTTTTTACATTATACGCATTGTAAAGGAATTTGACTTCTTCTCAATTTGTAAGTTTTCACGTCTTTGGACCTGTCGCCTTTTTATGTGTCGATGAGGTGTTTTTTAtgagatatttatttttctgccttGATGTACTTTTTCCCCCCCTGAAATAAGAGATACAGAATTGATGGTCTTGGTCTGCATGCTGATTTCTGAGTAACAAAATAACACTCAGTTTTGATGTTTAATTGTGCATTTGTGCAAGGGCTAATGTTTTCTTCCCAGATCTTTTGgaacaagtaataaaaaaaaaaggaccttTTTTGAA

Function

NR:

description
macoilin-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922841.2 True 2917 mRNA 0.48 11 17216213 17232098

Neighbor

gene id symbol gene type direction distance location
capn3b LOC108257553,LOC108424491 coding downstream 22566 17168187 ~ 17193647 (-)
churc1 churc1,LOC107659227,LOC107721357,LOC107555763 coding downstream 63258 17149788 ~ 17152955 (-)
mideasa LOC108258070 coding downstream 102562 17092570 ~ 17113651 (-)
laptm4a laptm4a,LOC107743288,LOC107678852 coding downstream 135404 17069425 ~ 17080809 (-)
zpax1 LOC108257994 coding downstream 174766 17030354 ~ 17041447 (-)
serac1 serac1,LOC107555766 coding upstream 5726 17237824 ~ 17248921 (-)
myct1a myct1 coding upstream 24283 17256381 ~ 17259866 (-)
armt1 armt1 coding upstream 280349 17512447 ~ 17520711 (-)
akap12b akap12 coding upstream 306812 17538910 ~ 17600760 (-)
mthfd1l mthfd1l,si:ch211-266i18.6,LOC107721348,LOC107659212,LOC107665399 coding upstream 376493 17608591 ~ 17666128 (-)
G297053 NA non-coding downstream 134099 17081872 ~ 17082114 (-)
G297052 NA non-coding downstream 149785 17065682 ~ 17066428 (-)
G297050 NA non-coding downstream 151828 17064166 ~ 17064385 (-)
G297049 matn3a,LOC108257995,LOC108424436 non-coding downstream 161210 17054364 ~ 17055003 (-)
G297045 NA non-coding downstream 165574 17050395 ~ 17050639 (-)
LOC113531886 NA non-coding upstream 183868 17415966 ~ 17421452 (-)
G297442 NA non-coding upstream 250226 17482324 ~ 17482887 (-)
G297465 NA non-coding upstream 424127 17656225 ~ 17656811 (-)
G297670 NA non-coding upstream 473502 17705600 ~ 17760410 (-)
G297712 NA non-coding upstream 609463 17841561 ~ 17842853 (-)
ttc32 ttc32 other downstream 169382 17043166 ~ 17046831 (-)
G296802 igf2r other downstream 658286 16555103 ~ 16557927 (-)
pln NA other downstream 1073597 16134134 ~ 16142616 (-)
G296263 cx32,LOC108257940,LOC108424424 other downstream 1733852 15463081 ~ 15482361 (-)
pkib pkib other downstream 1911916 15273854 ~ 15304297 (-)
gtf2h5 gtf2h5,tf2h5,LOC107721375,LOC107659223 other upstream 1879 17233977 ~ 17236129 (-)
esr1 esr1 other upstream 253486 17485584 ~ 17506658 (-)
acot20 LOC108257587,LOC108257591 other upstream 475188 17707286 ~ 17715272 (-)
dpf3 dpf3,LOC108257599,LOC108424513,LOC107659173,LOC107721322,LOC107668213,LOC107562702,LOC107602065,LOC107756570 other upstream 840447 18072545 ~ 18105993 (-)
ubr7 LOC108257828,LOC108411326 other upstream 1838362 19070460 ~ 19083511 (-)

Expression


Co-expression Network