churc1 (churc1,LOC107659227,LOC107721357,LOC107555763)


Basic Information

Item Value
gene id churc1
gene name churc1,LOC107659227,LOC107721357,LOC107555763
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 17149788 ~ 17152955 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923407.2
ACACAGCACTAAACTCCAACCAGAGAAGAAGAGAGTGCGGAAGTAAAGTGCGCTAAAAACAGCTAGCTACTTTAAACTGTATAAATCTCGtcatttgttagttttttttttaaatataaaaatgtgtacagATTGTGTGCAGAAGGAATATCCTGACAGGGGAAACACCTGCCTGGATAACGGCTCGTATCTGATGAACTTCCTGGGATGCGCCAACTGTCAGCAGCGAGACTTCGTGCTCATCAGCAACAAGACGCTGGTGGATGAAGACGAGGAGGAGATAGTCACTTACCTacATAAGTGCAAGAATTGTGACCATGTCATAGCCAGACACGAGTACACCTTCTCTGTGGTGGATGACTATCAGGAATACACAATGTTGTGTATGCTGTGTGGGAAGGCGGAAGATTCCATCAGTGTGATGCCAGATGATCCCAGACAAGCCGCCCCACTCTTCTAAACAGAAAAGACACAGAACAGTCTTAAATTGGTCTTAAATAAGAAGCTCCACTCGCGCAGAGTTTCATCCATGCTGAGCTCCGGAGGCcattttaaaatgactgacagatTATAATCcagttgtgtgtatttgttcatGTCCTTGAGAACCTTCCAGAAATGATCTGCAGCGTGAACGTCGGCTCTGTATTCGGGCATTCTCTCCCTGAGGAACTTACCGTAGGCTTTAATGGTATTAATAAGATCTGACAAGAGTGAAGAATGAatagtgtaaataaaacaatccTGTATGTTTTACATTAAAGCCTCCTGCTCATCCGCTGCTGCAGCATTTCTGCTTGTTCAGTGTATACTGTCAACTTTTATTAAAACTCTTTTGTATGCTttgtctaaataaaataaatgatgctCCATCACATCCTCA

Function

symbol description
churc1 Predicted to enable zinc ion binding activity. Acts upstream of or within several processes, including cell migration involved in gastrulation; fibroblast growth factor receptor signaling pathway involved in somitogenesis; and negative regulation of fibroblast growth factor receptor signaling pathway. Is expressed in several structures, including digestive system; ethmoid cartilage; forerunner cell group; keratinocyte; and mucus secreting cell. Orthologous to human CHURC1 (churchill domain containing 1).

NR:

description
Churchill protein

GO:

id name namespace
GO:0090243 fibroblast growth factor receptor signaling pathway involved in somitogenesis biological_process
GO:0042074 cell migration involved in gastrulation biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0040037 negative regulation of fibroblast growth factor receptor signaling pathway biological_process
GO:0030336 negative regulation of cell migration biological_process
GO:0042661 regulation of mesodermal cell fate specification biological_process
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923407.2 True 883 mRNA 0.42 4 17149788 17152955

Neighbor

gene id symbol gene type direction distance location
mideasa LOC108258070 coding downstream 36137 17092570 ~ 17113651 (-)
laptm4a laptm4a,LOC107743288,LOC107678852 coding downstream 68979 17069425 ~ 17080809 (-)
zpax1 LOC108257994 coding downstream 108341 17030354 ~ 17041447 (-)
mixl1 NA coding downstream 123615 17023135 ~ 17026173 (-)
LOC113531763 LOC102294303 coding downstream 158061 16990552 ~ 16991727 (-)
capn3b LOC108257553,LOC108424491 coding upstream 15232 17168187 ~ 17193647 (-)
si:dkey-12h9.6 LOC108258171,LOC103045157,LOC108424494,LOC105908978 coding upstream 63258 17216213 ~ 17232098 (-)
serac1 serac1,LOC107555766 coding upstream 84869 17237824 ~ 17248921 (-)
myct1a myct1 coding upstream 103426 17256381 ~ 17259866 (-)
armt1 armt1 coding upstream 359492 17512447 ~ 17520711 (-)
G297053 NA non-coding downstream 67674 17081872 ~ 17082114 (-)
G297052 NA non-coding downstream 83360 17065682 ~ 17066428 (-)
G297050 NA non-coding downstream 85403 17064166 ~ 17064385 (-)
G297049 matn3a,LOC108257995,LOC108424436 non-coding downstream 94785 17054364 ~ 17055003 (-)
G297045 NA non-coding downstream 99149 17050395 ~ 17050639 (-)
LOC113531886 NA non-coding upstream 263011 17415966 ~ 17421452 (-)
G297442 NA non-coding upstream 329369 17482324 ~ 17482887 (-)
G297465 NA non-coding upstream 503270 17656225 ~ 17656811 (-)
G297670 NA non-coding upstream 552645 17705600 ~ 17760410 (-)
G297712 NA non-coding upstream 688606 17841561 ~ 17842853 (-)
ttc32 ttc32 other downstream 102957 17043166 ~ 17046831 (-)
G296802 igf2r other downstream 591861 16555103 ~ 16557927 (-)
pln NA other downstream 1007172 16134134 ~ 16142616 (-)
G296263 cx32,LOC108257940,LOC108424424 other downstream 1667427 15463081 ~ 15482361 (-)
pkib pkib other downstream 1845491 15273854 ~ 15304297 (-)
gtf2h5 gtf2h5,tf2h5,LOC107721375,LOC107659223 other upstream 81022 17233977 ~ 17236129 (-)
esr1 esr1 other upstream 332629 17485584 ~ 17506658 (-)
acot20 LOC108257587,LOC108257591 other upstream 554331 17707286 ~ 17715272 (-)
dpf3 dpf3,LOC108257599,LOC108424513,LOC107659173,LOC107721322,LOC107668213,LOC107562702,LOC107602065,LOC107756570 other upstream 919590 18072545 ~ 18105993 (-)
ubr7 LOC108257828,LOC108411326 other upstream 1917505 19070460 ~ 19083511 (-)

Expression


Co-expression Network