RNA id: XM_026948144.2


Basic Information

Item Value
RNA id XM_026948144.2
length 3081
RNA type mRNA
GC content 0.53
exon number 11
gene id dll4
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 18272076 ~ 18282680 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACCGCTGTGCGTCTGAACCAACACTTCATTCACGACTTAAGGAGAGACGATCTGCGTTACTGCAGCACCCTAACGCACACAGTCGCATaaaacaagacacacacacaacacacacacacacacacaccccgaggcgactatctctctctctctcccacacacacacacacacacacacacacacgggaggTTTGTGGAATAGTGAACATGCAAGGACGGGACGGATAATAAGACTGGATCCAGCGCTTCACCTTCACCTTTTGGATAACCTGGAAATTTGAACGCGCCTTTTGCGCACGGAAGAGCGGCGACGCGCGCAGGAATATATtcccttcttctcctcctcgtacttttgtgtgctttatttatttatttatttttcattctttgaaGCCTTCCTTCCACTTTGGAATAGGAGCTTTATTTTTTGGTAGGAAATATCCCCGCGGGTGACCCGGCTGCCCCGCCACAGCATTTTGGGAAAATATAAAGGATGGCAGCTTGGTTCACCTTTCTGATCGCATGCTTCAGCGCGCTCCTAACGCAGatattcgGATCTGGTGTTTTCGAGCTCGAGCTCCACGAGTTCAAGAATTTTAAAGGTCTGCTGGCGAGCGGAACCTCATGCAGACCGGACTGCAGGACTTTTTTCCGTGTTTGTCTGAAGAACTACCAGGTGTCCGTGTCTCCAGGGGACTGCATCTTCGGCAGCGCCGTCACCCCAGTGCTGGGCTCCAACTCGTTCAGGATGGAGGGAGGACAACTGAGCACACCCATACGCCTGCCCTTCAACTTTGGATGGCCgGGATCATTTTCTTTGATTATTGAGGCCTGGTATTCACCCTCGGAGGATCCACCTGTAGACTCAAACAACCCCGACTTACAGATTAGTTCTTTTGCCATCCAAAGACAGCTGGAAGTAGGGGCTGAGTGGTCTCAGGATGTCCAAAGCGGTCAGCAGACGGAGCTAAGGTATTCTTACCGGTTCATCTGCAATGAAAATTACTACGGCGACAGTTGTTCCAAAATATGCACGCCCAGGGACGACCGTTTTGGCCACTACACCTGCAACCCAGACGGGCAGTTATCCTGTCTCCCCGGCTGGAAGGGGGAATACTGCGAAGAACCGATCTGCCTTAAAGGCTGCAGCGAAGCTAACGGCAACTGCTCCAATcctggagagtgtgtATGCCGAGAGGGCTGGCAGGGAACGTTCTGCACCGAGTGTAAGAAACACCCCGTGTGTAAGCATGGTACATGCCACAAGCCATGGGAGTGTCACTGTAAAGAAGGATGGGGAGGACTGTTCTGTGATCAAGATCTGAACTTCTGCACCCACCACAAGCCGTGTATGAACGGAGCCACGTGCACGAACACCGGGCAGGGCAGCTACACGTGCACGTGCAGGCCGGGCTACACCGGGGTCAACTGCGAGCTGGAGGTGCGTCACTGCGACAGCAACCCCTGCAGGAACCGAGGACACTGTGTGGAGCTGGATAATGGCTACACGTGCACGTGTCTGCCGGGGTTCGAGGGCACGCACTGCGAGCACAGCCTCCTGACCTGCGCAGACATGCCCTGCTTTCAGGGTGGCAAGTGCCATGAGAGGGACAACGGACGCAGCTATTCGTGCGACTGCCCTAAAGGATACACCGGACTCAACTGTGAGAAGAGGGTGGACAAATGTACGACTCTGCCGTGCGCTAATGGTGGTGCGTGTGTGATCCTGGCTGGCGTCCGTATGTGCAGCTGTCGAGCAGGATTTACAGGCCAGCGCTGCGAGATCAACATCAACGACTGCTCCTCGAACCCCTGCGCAAATGGCGGCACCTGTCTCGACGGCGTCAACGACTACTCCTGCTCGTGCGCTCCGGGGTACACCGGGCGGAACTGCGAGCTCCACAGCGCCCCCTGCTCTTCGCAGCCTCTCTGCCTGAACGGAGGATCGTGCACCAACGTCCCCGGCGGCcctcctgtgtgtctgtgtcccaGCGGCTTCATGGGGCCACGCTGCGATTTCCCCGTCACGCTTCCCGTACACACGGACCCCGAGCCCCGGGACAACTTCCAGTGGGCCGCCGTGTCCCTGGGCGTAGGTTTGGTGGCTCTGCTCGTGCTCGTGTGTATGGTGGCAATCGCTCTGCGCCACGTCCACAGGCAAGCGGCTGCCGAAAGGACTCACGACACCATGAACAATCAATCGGACACGCAGAGGGACAATCTGATACCGACGTCGCAGCTCAAGAACACGAACAAGAAGGTGGACCTGGAGGTGGACTGCGGTCAGGAGAAGTCGAATTACATCCTCAAGAACTACCATTTGGACTACAACTCGTCTAAAGAGTTTAAGGAAAGCCAGACGCAAGAAGATAAAAGTCACAAGTACGAAAAGTGTTTAGAAGACAAAATACCGTTGAGTAGAATGTACAGtgaaaaGCCGGAGTGTAGGATATCAACGATATGCTCCCCGAGAGACTCCATGTACCAGTCTGTGTTTGTAATAGCGGAGGAGAGAAGTGAATGCGTCATAGCAACTGAGgtataaACGACATGACGGGAGGATGAAGATGGAAGAtgcgaggggaaaaaaacacaatcaaagCAGAAATTTCTGGATtgtttacaagaaaaaaaaagaactgaaagaCTGGAGATGATTTTTTGTGATGTCCACTCACTGCTGCTCTGAGAAACTTGAGGACGCAATAGATGAAGTTTGCTTTTTGTGTACAGACGTGTACAGTCCTGGacgttttcttttcttctcttttttttttttttgacccctACGGTatggttttatgttttttccccctgtgaAGCTtgtaaggaagaaaaaaagcaggacTTACACTGACTGCACTGCAGGAGGACCAGGGTGGGGGGAAAAAGTCTTTGGCACAGAGACGTGCCCCCTCCCCACATTGAGCGAGTGagcgttttctctctctctctctctctctctctctcactatcatGTGGTAATCACAGACACGTCATCTGCCAACTACTCACTACGAAGGTGCCAGGGACTTCCAAACCTTCACGCCAGCATCATTGCCcactatgcaaaaaaaaaaa

Function

GO:

id name namespace
GO:0060854 branching involved in lymph vessel morphogenesis biological_process
GO:0060855 venous endothelial cell migration involved in lymph vessel development biological_process
GO:0030947 regulation of vascular endothelial growth factor receptor signaling pathway biological_process
GO:0007219 Notch signaling pathway biological_process
GO:0045765 regulation of angiogenesis biological_process
GO:0002040 sprouting angiogenesis biological_process
GO:0001569 branching involved in blood vessel morphogenesis biological_process
GO:0060840 artery development biological_process
GO:0060841 venous blood vessel development biological_process
GO:0043537 negative regulation of blood vessel endothelial cell migration biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K06051 DLL; delta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU352747 lncRNA downstream 18514 18253362 ~ 18253562 (-) True G297900
TU352733 lncRNA downstream 36566 18234878 ~ 18235510 (-) True G297887
TU352734 lncRNA downstream 36676 18234878 ~ 18235400 (-) False G297887
TU352672 lncRNA downstream 95470 18119168 ~ 18176606 (-) True G297839
XR_004580168.1 lncRNA downstream 112780 18156713 ~ 18159296 (-) True LOC117599806
XR_004580152.1 lncRNA upstream 89001 18371681 ~ 18426148 (-) True LOC117599783
TU352804 lncRNA upstream 227807 18510487 ~ 18510709 (-) True G297954
TU352810 lncRNA upstream 248998 18531678 ~ 18532840 (-) True G297960
TU352816 lncRNA upstream 266580 18549260 ~ 18549613 (-) True G297966
TU352819 lncRNA upstream 278917 18561597 ~ 18561834 (-) True G297969
XM_026948099.2 mRNA downstream 19616 18250272 ~ 18252460 (-) True chac1
XM_026948100.2 mRNA downstream 102981 18166379 ~ 18169095 (-) True rhov
XM_034313660.1 mRNA downstream 141583 18116550 ~ 18130493 (-) True zfyve1
XM_026948162.2 mRNA downstream 166083 18072545 ~ 18105993 (-) False dpf3
XM_026948147.2 mRNA upstream 293290 18575970 ~ 18580206 (-) True vrtn
XM_026948150.2 mRNA upstream 323841 18606521 ~ 18615280 (-) True zbtb1
XM_034313858.1 mRNA upstream 344696 18627376 ~ 18633161 (-) False si:dkey-1h6.8
XM_034313856.1 mRNA upstream 344696 18627376 ~ 18633161 (-) False si:dkey-1h6.8
XM_034313857.1 mRNA upstream 344696 18627376 ~ 18633161 (-) True si:dkey-1h6.8
XR_003404857.2 other downstream 166083 18075362 ~ 18105993 (-) False dpf3
TU352481 other downstream 556832 17707286 ~ 17715244 (-) False acot20
TU351727 other downstream 1225266 17043313 ~ 17046810 (-) False ttc32
TU351456 other downstream 1714149 16555103 ~ 16557927 (-) False G296802
TU353207 other upstream 795324 19078004 ~ 19083465 (-) False ubr7
LOC113547697 other upstream 983147 19265827 ~ 19267009 (-) True LOC113547697
TU353415 other upstream 1108319 19390999 ~ 19391487 (-) False LOC113525604
XR_004580086.1 other upstream 1165713 19448393 ~ 19451604 (-) False LOC113524711
LOC113524722 other upstream 1189340 19472020 ~ 19473976 (-) True LOC113524722

Expression Profile