RNA id: TU352734


Basic Information

Item Value
RNA id TU352734
length 427
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G297887
representative False

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 18234878 ~ 18235510 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACATACAATAACGTAAtgaccacaccacacaccacatacaaTAACGTAAtgaccacaccacacaccacatacaaTAACGTAATgaccacactacacaccacataCAATAACGTAAtgaccacactacacaccacataCAATAACGTAAtgaccacaccacacaccacatacaaTAACGtaatgaccacacacacaccacagacaataACGTAAtgaccacaccacacaccacatacaaTAACGTAAtgaccacaccacacaccacagacaataACGTAAtgaccacaccacacaccacatacaaTAACGTAAtgaccacaccacacaccacagacaataACGTAAtgaccacaccacacaccacagacaataATGTAAtgaccacaccacacaccacagacaataACGTAATGACCACACCACACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU352672 lncRNA downstream 58272 18119168 ~ 18176606 (-) True G297839
XR_004580168.1 lncRNA downstream 75582 18156713 ~ 18159296 (-) True LOC117599806
TU352538 lncRNA downstream 281407 17854885 ~ 17953471 (-) True G297718
TU352544 lncRNA downstream 360134 17874452 ~ 17874744 (-) True G297724
TU352540 lncRNA downstream 369227 17865288 ~ 17865651 (-) True G297720
TU352747 lncRNA upstream 17962 18253362 ~ 18253562 (-) True G297900
XR_004580152.1 lncRNA upstream 136281 18371681 ~ 18426148 (-) True LOC117599783
TU352804 lncRNA upstream 275087 18510487 ~ 18510709 (-) True G297954
TU352810 lncRNA upstream 296278 18531678 ~ 18532840 (-) True G297960
TU352816 lncRNA upstream 313860 18549260 ~ 18549613 (-) True G297966
XM_026948100.2 mRNA downstream 65783 18166379 ~ 18169095 (-) True rhov
XM_034313660.1 mRNA downstream 104385 18116550 ~ 18130493 (-) True zfyve1
XM_026948162.2 mRNA downstream 128885 18072545 ~ 18105993 (-) False dpf3
XM_026948099.2 mRNA upstream 14872 18250272 ~ 18252460 (-) True chac1
XM_026948144.2 mRNA upstream 36676 18272076 ~ 18282680 (-) True dll4
XM_026948147.2 mRNA upstream 340570 18575970 ~ 18580206 (-) True vrtn
XM_026948150.2 mRNA upstream 371121 18606521 ~ 18615280 (-) True zbtb1
XM_034313858.1 mRNA upstream 391976 18627376 ~ 18633161 (-) False si:dkey-1h6.8
XR_003404857.2 other downstream 128885 18075362 ~ 18105993 (-) False dpf3
TU352481 other downstream 519634 17707286 ~ 17715244 (-) False acot20
TU351727 other downstream 1188068 17043313 ~ 17046810 (-) False ttc32
TU351456 other downstream 1676951 16555103 ~ 16557927 (-) False G296802
TU353207 other upstream 842604 19078004 ~ 19083465 (-) False ubr7
LOC113547697 other upstream 1030427 19265827 ~ 19267009 (-) True LOC113547697
TU353415 other upstream 1155599 19390999 ~ 19391487 (-) False LOC113525604
XR_004580086.1 other upstream 1212993 19448393 ~ 19451604 (-) False LOC113524711
LOC113524722 other upstream 1236620 19472020 ~ 19473976 (-) True LOC113524722

Expression Profile