RNA id: XM_026911106.2


Basic Information

Item Value
RNA id XM_026911106.2
length 1753
RNA type mRNA
GC content 0.43
exon number 6
gene id LOC113524747
representative False

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 20425285 ~ 20437474 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTCTGTAAACTCACCACAGAAGAAGCTGAAGTGAGGGAGATGGGGATGTTTATGTTTCTCTCCTGAATGAACGGTTGAGTTTTTATCATTTCTGAGTAAACAAATATTTCTGGTTGGAAATTTTTAGGcgtatagattaaaaaaaaaagttaatccttgtgtgtgtatttgagctTCTGCGTTTAAAGCCATGAGAATCGGGACCTTTTAGACTTTTTGTAATGGAGTCAGCAGAGGTGCAGCCGAGCCCTTTCAGAAAATCTCTACACACTCCTGCTCGCTCACGGCTTTATGAGGATGTGAGGACAGAAACGTGTACGGGTTCAGGCTCTGTGGGACACATCAACACTGTGAACCATcagaaacatataaaaaaggaagaaactgAAGAGGAAGACGATCTCTGTAAGTCAACAGCGCACAATACAGTCCAGTCTGATGGTGAAGGGACATCCAGCGCTGTGGGAGACATCACACCTGTGAATGAACACAAACCTGTAATAAAGGAAGAACCTGAAGATGAAGACTATCtctGTGAAGGAACGTCGAGCCCTGTGGGACACAGCAGCACTGTGGACGAGCAGAATGAAGAATTTCAAATAATGCTTGTAAAAGAGGAAGAGTCTGAAGATGAAGGCAGCATCTGTACAGCGACAGTTTGTGAAATGGACGATGATCAGTTGCAAGTCTTCTCCTGCTCCTGGTGTTCACTTTCCTATACATCTCAAATTGACCTCGAAACACACATCAGAAGAAACCATAATGATGAATATGAGAAAGTGGTGATCTCAGGAGAGATTCCATATGAGAGTCTAATATTGACAAGAAGCTCCAGTATTCAGCAAATATCTTCTGATTCTGTCACCAGTAACAACTCTCATGGACAAATGCAGAAAGTCTATCCCTGTCTGGAGTGTGGGAATAGATTTACGAACAAGAGTAATCTTAAAgcacaccagcgcattcacacgggagagaagccgtatcagtgctcgcagtgtggaaagagttttactcGACAGAGTTCTCTCCAGCAGCACCAGGTGGTTCACACGGGAGAGAAGCCGCATCACTGCTTAGAGTGTGGAAAGACTTTCACTCGACAGAGCTCTCTCCAGCAACACCGGCGCATTCACACGGGGGAGAAGCCGCAtcactgctcagagtgtgggaaACGTTTTCCTCGACAGAGTGATCTCCAaaaacaccagcgcattcacacaggagagaagccctATCAGTGCTcccagtgtggaaagagttttagtCAAAAAGGTAATCTtcaaacacaccagcaaattCATACAGAAGAGAAACCATATCACTGCACACAGTGTGGGAAAAGTTTTACCTGGCAGAGTACTTTTCAaacacaccagcgcattcatGCGCGAAAAGCCATGTCAGTAGTCACAGTGTAAGAAGAGTTTTACCTGTCTGCGCCATCTCCAGTGACAGCAGCGCATTCGAATCATAGACAAGCTACAAGAGTTTCACGTATTCAGGTGTGTTTAATATACACAATTAACGTGGCCACTATTGGATTTCCAGCTGTCGAGgccataaaaatattaaagaatgttCTGTTGCATTTTTTAGATATTTGATTTGTCTCTTTAGCTGTAAGTTTGAAGTGGATTGGTAAATTGATAAACACAAaactctatttttatttgtatagtgcttttaacattggacgttgtcacaaagctgctttacagaaaacctTCACTAGTAATTTATGTTCCTTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU353905 lncRNA downstream 34568 20390134 ~ 20390717 (-) True G298794
TU353904 lncRNA downstream 35585 20389084 ~ 20389700 (-) False G298794
TU353886 lncRNA downstream 59789 20365285 ~ 20365496 (-) True trnah-gug_23
TU353863 lncRNA downstream 177370 20247235 ~ 20247915 (-) True G298758
TU353862 lncRNA downstream 178883 20243428 ~ 20246402 (-) True G298757
TU353941 lncRNA upstream 54535 20492009 ~ 20501140 (-) True G298823
XR_004580093.1 lncRNA upstream 207915 20645389 ~ 20646391 (-) True LOC117599711
TU354012 lncRNA upstream 238569 20676043 ~ 20677510 (-) True G298878
TU354044 lncRNA upstream 268003 20705477 ~ 20714490 (-) False G298890
TU354043 lncRNA upstream 287470 20724944 ~ 20730010 (-) True G298890
XM_026911126.2 mRNA downstream 21726 20392640 ~ 20403559 (-) True LOC113524770
XM_034313541.1 mRNA downstream 121538 20293412 ~ 20303747 (-) True gtf2a1
XM_026911127.2 mRNA downstream 145440 20276967 ~ 20279845 (-) True nfkbiaa
XM_026909974.2 mRNA downstream 275812 20147871 ~ 20149473 (-) True LOC113523908
XM_034313569.1 mRNA downstream 318040 20105758 ~ 20107245 (-) True LOC117599697
XM_034313575.1 mRNA upstream 2146 20439620 ~ 20442292 (-) True LOC117599698
XM_034313576.1 mRNA upstream 2146 20439620 ~ 20442291 (-) False LOC117599698
XM_034313606.1 mRNA upstream 129472 20566946 ~ 20575254 (-) True LOC113524741
XM_034313540.1 mRNA upstream 147193 20584667 ~ 20591786 (-) True LOC117599679
XM_034313535.1 mRNA upstream 155967 20593441 ~ 20599093 (-) False LOC113524753
trnae-uuc_16 other downstream 1703 20423511 ~ 20423582 (-) True trnae-uuc_16
trnae-uuc_15 other downstream 3359 20421855 ~ 20421926 (-) True trnae-uuc_15
trnae-uuc_14 other downstream 5924 20419290 ~ 20419361 (-) True trnae-uuc_14
trnah-gug_25 other downstream 46380 20378834 ~ 20378905 (-) True trnah-gug_25
trnae-uuc_13 other downstream 46909 20378305 ~ 20378376 (-) True trnae-uuc_13
TU353922 other upstream 3392 20440866 ~ 20442088 (-) False LOC117599698
TU354008 other upstream 218525 20655999 ~ 20664540 (-) True G298875
trnae-uuc_17 other upstream 313026 20750500 ~ 20750571 (-) True trnae-uuc_17
trnai-uau_9 other upstream 520157 20957631 ~ 20957723 (-) True trnai-uau_9
trnar-ucu_11 other upstream 522022 20959496 ~ 20959588 (-) True trnar-ucu_11

Expression Profile