RNA id: XM_034313541.1


Basic Information

Item Value
RNA id XM_034313541.1
length 1602
RNA type mRNA
GC content 0.52
exon number 10
gene id gtf2a1
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 20293412 ~ 20303747 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCGAAGCCCGCTTACTGCCCGTGCCCTATGGTCTCGCGCATCCTCAGGTCGGTATATAAAGGCGGAACGGCGACGGGAGCAGGACGGCTGGGACCGAGCAGCCCCGGGACTGAGATATAATTATATAGATCGTAAAACAGCTGggtgctttatttattaattatttttttttgtctccgaACATATGTTGactacttttaaatattttagctgTTTTTGAAGTTCTTAAACTGGTTGATTTTCCTCGGTagttgttgtgtgttgtttttttttaacactacgGTAGTTAAAATGGCGAGCTCGGCCAACTCGAACCCAGTGCCTAGACTGTATAAGACTGTGATGGAGGATGTGATTAATGAAGTTCGTGAGCTGTTCCTGGACGAAGGCGTGGACGAGCAGGTTCTCATGGAGCTCAAAACGCTGTGGGAGAGTAAGCTGATGCAGTCGAAGGCCGTGGACGGTTTCCACACGGAGGAGCAGCAGGTTCTTCAGGCTCCACAGACGCAGGTTCCACAGGTCCAGCAGACCCAACAGACGACGCAACCGCAGCAGGTTCTCCTTCCTCCAGCACAGCAAGcccCACAGCAGCAGGTGATCATACAGGACCCCAAAATCCTGCAGCACATGAGCGCTACAGGCATGagtgcAGCTGCCACTGCAGCGACTTTGGCGTTGCCCCACGGAGTTACGGGAGTAGGACCCTACCAACAGCTCATCACTAATCAAGgtcagaTCCTGCAGGTGGTGAGAGCTGCTAATGGAGCTCAGTACATCATTCAGCCTCAGCAGCCCATCATGGTGCAGCAGCAGGTCCTGCCTCAGATACAGGCCAGTGCAGGAGTGCAGGCTCCGGTTATacagcagatGCTGACCCCACTGCAGGGTGGTCTTCCTCAGCAGACCGGTGTGATCATTCAGCCTCAGCAGATCGTCCTCAcgcaaaataaagtgcagcagAACGCTCAGgtgATGCAGGCAGCCATGGCTCAAGGAcagactcaaacacaaacacaaccccaaacacacacacaaactccacaGCAACCACAAACGGCACAACAACAAGCGcagcctcagcagcagcagcagcagcagcaggcacAAGCTCCGCTGATGCTCCAGGTGGACGGCGCCGGAGACACGTCATCggaggaggacgaggacgaGGAGGACGAATACGACGAGGATGAAGACGAGGACAAGGACAAAGACGGAGGCGAGGACGGCCAagtggaggaggaGCCTCTGAACAGCGGCGATGACGTAAGCGACGAGGAGGATCAGGAGCTGTTCGACACCGAGAATGTCGTCGTGTGTCAGTATGATaagATCCACAGAAGTAAGAACAAATGGAAATTCCACCTGAAAGACGGGATCATGAACCTGAACGGACGCGATTACGTTTTTTCCAAAGCCATCGGAGACGCAGAGTGGtaaacacacgcgcacacacacacgatagaCTCcagagtgagagcgagagacgCGTCAGATTTCTACAGGAGGACGGGACTGTTTCAGCATCAGGAGAAAACGCACATGGTGTGGGATGAAGAAGGACGTCCTGATactgtaccaaaaaaaaaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0006367 transcription initiation from RNA polymerase II promoter biological_process
GO:0005672 transcription factor TFIIA complex cellular_component

KEGG:

id description
K03122 TFIIA1, GTF2A1, TOA1; transcription initiation factor TFIIA large subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU353863 lncRNA downstream 45497 20247235 ~ 20247915 (-) True G298758
TU353862 lncRNA downstream 47010 20243428 ~ 20246402 (-) True G298757
TU353857 lncRNA downstream 56178 20236928 ~ 20237234 (-) True G298752
XR_004580091.1 lncRNA downstream 102768 20190083 ~ 20190644 (-) True LOC117599709
XR_004580094.1 lncRNA downstream 109838 20183058 ~ 20183574 (-) True LOC117599712
TU353886 lncRNA upstream 61538 20365285 ~ 20365496 (-) True trnah-gug_23
TU353904 lncRNA upstream 85337 20389084 ~ 20389700 (-) False G298794
TU353905 lncRNA upstream 86387 20390134 ~ 20390717 (-) True G298794
TU353913 lncRNA upstream 125767 20429514 ~ 20430208 (-) True G298801
TU353941 lncRNA upstream 188262 20492009 ~ 20501140 (-) True G298823
XM_026911127.2 mRNA downstream 13567 20276967 ~ 20279845 (-) True nfkbiaa
XM_026909974.2 mRNA downstream 143939 20147871 ~ 20149473 (-) True LOC113523908
XM_034313569.1 mRNA downstream 186167 20105758 ~ 20107245 (-) True LOC117599697
XM_034313602.1 mRNA downstream 362159 19924626 ~ 19931253 (-) True LOC117599719
XM_034313542.1 mRNA downstream 415667 19876162 ~ 19877745 (-) True LOC117599680
XM_026911126.2 mRNA upstream 88893 20392640 ~ 20403559 (-) True LOC113524770
XM_026911108.2 mRNA upstream 121538 20425285 ~ 20437474 (-) False LOC113524747
XM_026911106.2 mRNA upstream 121538 20425285 ~ 20437474 (-) False LOC113524747
XM_026911107.2 mRNA upstream 121538 20425285 ~ 20437474 (-) True LOC113524747
XM_034313575.1 mRNA upstream 135873 20439620 ~ 20442292 (-) True LOC117599698
TU353574 other downstream 352413 19884160 ~ 19940999 (-) False G298543
TU353585 other downstream 407617 19884807 ~ 19885795 (-) True G298543
XR_004580096.1 other downstream 581361 19711647 ~ 19712051 (-) True LOC117599714
TU353447 other downstream 701975 19590959 ~ 19591437 (-) True G298475
LOC113524722 other downstream 819436 19472020 ~ 19473976 (-) True LOC113524722
trnae-uuc_5 other upstream 5542 20309289 ~ 20309360 (-) True trnae-uuc_5
trnar-acg_12 other upstream 5773 20309520 ~ 20309592 (-) True trnar-acg_12
trnah-gug_15 other upstream 7061 20310808 ~ 20310879 (-) True trnah-gug_15
trnar-acg_15 other upstream 30976 20334723 ~ 20334795 (-) True trnar-acg_15
trnah-gug_19 other upstream 33297 20337044 ~ 20337115 (-) True trnah-gug_19

Expression Profile