RNA id: XR_004580094.1


Basic Information

Item Value
RNA id XR_004580094.1
length 304
lncRNA type inter_gene
GC content 0.52
exon number 3
gene id LOC117599712
representative True

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 20183058 ~ 20183574 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttggtttgctcGTCTACCCTGGGTTTTCTCCTGTTAGTCGGAGCCCGTAGAGGTCTGTGCCTTGATTGTAAAGGGTGCAGTTGTTGGAGTCCTGCTCCAGGAGtttgttgctgcttgtttgcgCTTATAGTGCGTATATCTCATCTGTGAGTGTTGTAAGCCTGAGGTTGTGTTGCATCGGTTCCTGCTTTCCGgagctcCTCTGCATCGCTGCTTGTGCAGGTGACTTCTGCTGCTGATTTGCTGCTGTGACTTCAAACCATTGGGGCCGTCTGCTGACGGcgagctgctgttttgtttctag

Function

GO:

id name namespace
GO:0098797 plasma membrane protein complex cellular_component
GO:0004672 protein kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU353600 lncRNA downstream 228760 19953944 ~ 19954298 (-) True G298549
XR_004580095.1 lncRNA downstream 355134 19826993 ~ 19827924 (-) True LOC117599713
TU353414 lncRNA downstream 640297 19518847 ~ 19542761 (-) False G298444
TU353403 lncRNA downstream 731777 19377665 ~ 19451281 (-) True G298444
XR_004580091.1 lncRNA upstream 6509 20190083 ~ 20190644 (-) True LOC117599709
TU353857 lncRNA upstream 53354 20236928 ~ 20237234 (-) True G298752
TU353862 lncRNA upstream 59854 20243428 ~ 20246402 (-) True G298757
TU353863 lncRNA upstream 63661 20247235 ~ 20247915 (-) True G298758
TU353886 lncRNA upstream 181711 20365285 ~ 20365496 (-) True trnah-gug_23
XM_026909974.2 mRNA downstream 33585 20147871 ~ 20149473 (-) True LOC113523908
XM_034313569.1 mRNA downstream 75813 20105758 ~ 20107245 (-) True LOC117599697
XM_034313602.1 mRNA downstream 251805 19924626 ~ 19931253 (-) True LOC117599719
XM_034313542.1 mRNA downstream 305313 19876162 ~ 19877745 (-) True LOC117599680
XM_034313543.1 mRNA downstream 305313 19876162 ~ 19877745 (-) False LOC117599680
XM_026911127.2 mRNA upstream 93393 20276967 ~ 20279845 (-) True nfkbiaa
XM_034313541.1 mRNA upstream 109838 20293412 ~ 20303747 (-) True gtf2a1
XM_026911126.2 mRNA upstream 209066 20392640 ~ 20403559 (-) True LOC113524770
XM_026911108.2 mRNA upstream 241711 20425285 ~ 20437474 (-) False LOC113524747
XM_026911106.2 mRNA upstream 241711 20425285 ~ 20437474 (-) False LOC113524747
TU353574 other downstream 242059 19884160 ~ 19940999 (-) False G298543
TU353585 other downstream 297263 19884807 ~ 19885795 (-) True G298543
XR_004580096.1 other downstream 471007 19711647 ~ 19712051 (-) True LOC117599714
TU353447 other downstream 591621 19590959 ~ 19591437 (-) True G298475
LOC113524722 other downstream 709082 19472020 ~ 19473976 (-) True LOC113524722
trnae-uuc_5 other upstream 125715 20309289 ~ 20309360 (-) True trnae-uuc_5
trnar-acg_12 other upstream 125946 20309520 ~ 20309592 (-) True trnar-acg_12
trnah-gug_15 other upstream 127234 20310808 ~ 20310879 (-) True trnah-gug_15
trnar-acg_15 other upstream 151149 20334723 ~ 20334795 (-) True trnar-acg_15
trnah-gug_19 other upstream 153470 20337044 ~ 20337115 (-) True trnah-gug_19

Expression Profile