G79221


Basic Information

Item Value
gene id G79221
gene name NA
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 8664690 ~ 8665579 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU94039
ACAGAAACTACCCAAATGACCCTGATCAAAGGTTTACATACCCTGGTGATTTTGTCCTGATAACATGCAAACAAGTTGCCACAAATGGGTTTGAATGGCTATTAAAGGTAGCCATCCTCACCTGTGACCTGTTTGCttgtaattagtgtgtgtgtataaaaggtCAGTGAGTTTCTGGACTCCTGACAGACCCTTGCATCTTTGATCCAATGCTGCACTGATGTTTCTGAATTCTGAGTCATGGGGAAAGCAAAAGAATTGTCAAAGGATCTGCGGGAAAAGGTAGTTGAACTGTATAAAACAGGaaagggatataaaaagatatccAAGGAATTGAGAATGCCAATCAGCAGTGTTCAAACTCTAATTGAGAAGTGGAAAATTAGGGGTTCTGTTGAAACCAAACCACGGTCAGGAAGACCAACTAAAATTTCGGCCACAACTGCCAGGAAAATTGTTCGGGATGCaaagaaaaacccacaaattaCTTCAGGTGAAATACAGGACTCTCTGAAAAAATGTGGTGTGGCTGTTTCAAGGTGCACAATAAGGAGGCACTTGAAGAAAGATGGGCTGCATGGTCGAGTCGCCAGAAGAAAGCCATTACTACGCAAATGCCACAAAGTATCCCGCTTACAATACGCCAAACAGCACAGAGACAAGCCTCAAACCTTCTGGCACAAAGTCATTTGGagtgatgagaccaaaattgaactttttggccacaACCATAAACGCTACATTTGGAGAGGAGTCAACAAGGCTTATGATGAAAGGTACACCATTCCTACTGTGAAACACGGAGGTGGATCACTGATGTTTTGGGGATGTGTGAGCTACAAAGGCACAGGAAATTTGGTCAGAATTGATGGCAAGATGAATGCAGTATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU94039 True 890 TUCP 0.42 1 8664690 8665579

Neighbor

gene id symbol gene type direction distance location
gja8a gja8 coding downstream 40040 8617862 ~ 8624650 (-)
cmss1 cmss1 coding downstream 209851 8442843 ~ 8454839 (-)
tmem30c LOC108266690 coding downstream 222204 8433944 ~ 8442486 (-)
col8a1a col8a1,col8a1a,LOC107720134,LOC108432575,LOC105911455 coding downstream 291324 8361280 ~ 8373366 (-)
jagn1a jagn1a,LOC108266178,LOC108432576,LOC107555208,LOC107748222,LOC107720154,LOC107655493,LOC103032247 coding downstream 305809 8356361 ~ 8358881 (-)
chaf1b chaf1b,LOC107579096 coding upstream 30806 8696385 ~ 8708597 (-)
LOC113523849 LOC108266382 coding upstream 47166 8712745 ~ 8728448 (-)
LOC113526244 NA coding upstream 68958 8734537 ~ 8762622 (-)
LOC117597417 NA coding upstream 98935 8764514 ~ 8767856 (-)
LOC117597418 morc3,LOC108266382,LOC108266383 coding upstream 129107 8794686 ~ 8801200 (-)
G79220 acp6 non-coding downstream 275 8662928 ~ 8664415 (-)
G79184 NA non-coding downstream 49648 8614805 ~ 8615042 (-)
LOC117597396 NA non-coding downstream 58493 8590813 ~ 8606197 (-)
LOC113525361 NA non-coding downstream 348335 8295512 ~ 8316355 (-)
G78991 NA non-coding downstream 360691 8292758 ~ 8303999 (-)
G79223 NA non-coding upstream 1638 8667217 ~ 8667743 (-)
G79227 NA non-coding upstream 2536 8668115 ~ 8673751 (-)
LOC117597335 NA non-coding upstream 107044 8772623 ~ 8775403 (-)
G79360 NA non-coding upstream 268366 8933945 ~ 8934415 (-)
G79414 NA non-coding upstream 377169 9042748 ~ 9043426 (-)
G78626 LOC108266388 other downstream 917052 7744726 ~ 7747638 (-)
fzd5 fzd5,LOC108430504,LOC107551950,LOC107733649 other downstream 1115059 7544506 ~ 7549631 (-)
LOC117597373 NA other downstream 1213129 7449048 ~ 7451561 (-)
G78159 NA other downstream 1617881 7043787 ~ 7046809 (-)
G78058 LOC108266211,LOC108266891,LOC108262141,LOC108266899,LOC108266212,LOC108266919,LOC108266892,LOC108262627,LOC108266242,LOC108266894,LOC108266896,LOC108266893,LOC108266912,LOC108266890 other downstream 2049030 6529046 ~ 6615660 (-)
si:dkey-229b18.3 LOC108266764 other upstream 9225 8674804 ~ 8683415 (-)
G79349 NA other upstream 105887 8771466 ~ 8772429 (-)
LOC117597331 NA other upstream 192240 8857819 ~ 8877236 (-)
G79388 slc5a3,LOC108432604,LOC107748166,LOC107569828,LOC568338,LOC107673698,LOC107756792 other upstream 331204 8996783 ~ 9019448 (-)
cnga4 cnga4 other upstream 433957 9099536 ~ 9148647 (-)

Expression


Co-expression Network