LOC113531715 (LOC108265567,LOC108414659)


Basic Information

Item Value
gene id LOC113531715
gene name LOC108265567,LOC108414659
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 12659028 ~ 12662145 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026922582.2
ATGAAACAGATTGTGATCCTGTGTGTGTTGGTCGCACTCTCGCAGTGCATCAGGGTGCCGTTGATTAAGGGCAAAACTGCACGGCAGAGGCTGCAGGAGAAAGGTCTGTGGGAGGAATACAGAAAGAAATATCCCTACAGACCCTGGATCAAGTTTGATCAGACTGGTCAAGAGTCCATGACCAACGATGCTGATCTTTCCTACTATGGCGTGATCACCATTGGAACTCCTCCTCAGTCCTTCACAGTGCTTATGGATACAGGCTCATCTAATCTGTGGGTGCCGTCTGTCTACTGTTCAAGCCAAGCCTGCCagAACCATGATCAGTTCAATCCACAGCAGTCCAGCACTTTCCAGAGCACCAATCAGTCTATCTCTATTCAGTATGGCACAGGCAGCATGACTGGCGTCCTGGGATATGACACGGTGACGGTTGGTGGAATCTCAGTGCAAAATCAGATCTTTGGACTGAGTGAGACTGAGGCTACTTTCATGGCCAGCATGACGGCAGATGGCATCATGGGTCTGGCCTACCAATCCATTTCCTCTGATAGTGCCACTCCTGTCTTTGACAACATGATGAGTCAGGGCTTGGTCTCCCAGGACGTCTTCTCAGTCTACCTGAGCAGCAATGAGCAAGAGGGCAGCATGTTGTTCCTGGGAGAGATTGACACCTCCTACTACACTGGCAGCATCTACTGGATCCCTCTTTCCTCTGAGAGCTACTACCAGATCACCATGGACAGTGTTACCATCAATGGACAGGTTGTTGGTTGTAGTGGTGGTTGTCAAGTTATTGTTGATACTGGAACGTCCCTTATTATTGGACCAAGCAGTGACATCAGCAACCTGAATGCCTATCTTGGTGCCCAGACAGACCAATATGGAGATTCTATTGTGAGCTGCAGCAGTGTCCAGAGCTTGCCTTCAGTTACCTTCAACATTAATGGCTATGCcttctccatccctccatcatcctttGTCACACAGGGCAACAGTGACTGCCAAACAGGTTTCTCTGGTGGCAACTTTGGAAGCAGCTTCTCCTGGATCTTGGGTGACGTTTTCATCAGGAATTGGTACACCATCTTTAACAGAGCGAACAACAGTGTGGGCCTGGCTCAGGTGGCTTAAGAACTAATGGCAAT

Function

NR:

description
PREDICTED: pepsin A-like

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004190 aspartic-type endopeptidase activity molecular_function

KEGG:

id description
K06002 PGA; pepsin A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026922582.2 True 1148 mRNA 0.49 9 12659028 12662145

Neighbor

gene id symbol gene type direction distance location
LOC113531099 pepa,LOC108442134,LOC108265564,LOC108414658 coding upstream 4345 12651225 ~ 12654683 (+)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 coding upstream 9921 12646689 ~ 12649107 (+)
alx3 alx3 coding upstream 61589 12586799 ~ 12597439 (+)
kcnc4 kcnc4,LOC107731196 coding upstream 149362 12478618 ~ 12509666 (+)
ahcyl1 ahcyl1,LOC107679038,LOC107591817,LOC107668032 coding upstream 183278 12450275 ~ 12475750 (+)
adora1b adora1b,LOC108265083,LOC108414989,LOC103022582,LOC107711940,LOC107591868,LOC107680252,LOC107550463 coding downstream 113781 12775926 ~ 12783157 (+)
dclre1b dclre1b coding downstream 130071 12792216 ~ 12798367 (+)
lhfpl5b lhfpl5,LOC107591869,LOC107745833,LOC102777996 coding downstream 254293 12916438 ~ 12921186 (+)
c8h1orf194 c5h1orf194 coding downstream 315882 12978027 ~ 12979366 (+)
inavaa LOC108264883 coding downstream 323282 12985427 ~ 12994779 (+)
LOC117597859 NA non-coding upstream 125770 12519894 ~ 12533258 (+)
G131282 NA non-coding upstream 432666 12226152 ~ 12226362 (+)
G131279 NA non-coding upstream 441814 12217004 ~ 12217214 (+)
G131061 NA non-coding upstream 941143 11716832 ~ 11717885 (+)
G130960 NA non-coding upstream 1106997 11548962 ~ 11552031 (+)
G131606 NA non-coding downstream 28022 12690167 ~ 12712485 (+)
LOC117597872 NA non-coding downstream 38567 12700712 ~ 12701501 (+)
G131605 NA non-coding downstream 50480 12712625 ~ 12729522 (+)
LOC117597782 NA non-coding downstream 146978 12809123 ~ 12809738 (+)
LOC117597771 p38a,LOC104939458,LOC100692416,LOC108442382 non-coding downstream 275159 12937304 ~ 12941456 (+)
rbm15 rbm15,LOC107731203 other upstream 54323 12599698 ~ 12604705 (+)
kcnq2a LOC108265949,LOC108442249,LOC107668096,LOC107550457,LOC107711924,LOC107731192,LOC107679259 other upstream 429027 12196593 ~ 12230001 (+)
foxp3a LOC108265789 other upstream 663176 11979186 ~ 11995852 (+)
porcn porcn,LOC108265120,LOC108441640,LOC107668076,LOC107585894,LOC107745789 other upstream 944996 11705547 ~ 11714032 (+)
uck2a uck2,uck2a,LOC108441637,LOC107731246,LOC107668082,LOC107745792,LOC107585889,LOC106584056,LOC107549113,LOC107695269 other upstream 962237 11677511 ~ 11696791 (+)
LOC113527348 LOC108266008,LOC108437580,LOC107731173,LOC107549994,LOC107745767 other downstream 1043021 13705166 ~ 13791317 (+)
dock8 dock8 other downstream 1228259 13890404 ~ 13948808 (+)
aopep c5h9orf3,cunh9orf3 other downstream 1287792 13949937 ~ 14022687 (+)
G132595 atoh1 other downstream 1660027 14322172 ~ 14323450 (+)
commd10 commd10 other downstream 2278156 14940301 ~ 14982884 (+)

Expression


Co-expression Network