inavaa (LOC108264883)


Basic Information

Item Value
gene id inavaa
gene name LOC108264883
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 12985427 ~ 12994779 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026939856.2
agtgggtgtgtgtgtgcgcgtgcctgtgtgtgtgtgtgtgtatgtgtgtgtgtaacctgcTGAGCGTCTGTgttaatggattaaaaagttGACAAGCTCATTTACAGACCCATCTCGGAGTGACAACTAAAGAAGAGACTCTGGAACAACTTATATCTCAAAGTAGGAAAAGCATGGACTGCAAGGAAGAAATCAGTGACTCAGACAGTGGGATCATCTTAAATTCTGGTCCAGACAGCCCTACATCTCCTGTGAAGGACCTCAGCACTCACACACGGGCCATGAGGCTTAAGCACCAGGCTCTGGAGGACAGACTGGAGCTGTGTCTTCTGGAGCTAAAGAAACTGTGCACCAGAGAGGCAgaactTACTGGAAAGCTGTCATCTGACTATCCATTGCTGCCGAATGAGAAACCACCACAGATCAGGCGACGCGTTGGAGCATCCTTTAAACTGGATGAAGGGTTGCTTCCCCATGGAGATGGAGAGGAATCAGTGTTGCATTCACTTGAGGCTGATCTGGCCCTCCAGAGGCAGATATATGAAGCAGCCCGAAGGCTGTCCCTTGAGGAACACATCAGCAAGCCGGTGAGGAAGAGCCGACTGCAGCAATGCAAacgtgaagaaaagaaaatgaaggagCTCCAGGAAGCTGTGTTAAAGCACTGCATTAACCACGGCTGTGTTTCACCAGAGACCTGCTGTTCCTCCAGGCAGAGAGACCTGTGCATGTCTGATGACAGCTCGCTGTCTGACGCTGCTGCCCATGATGATGATTTAGAGCCAGGCCCAATGTCCCCGATGGCTGTGGACTCTGTGACTGGTTTCCAGCATGTGCTGACCCTCTCGCCTTGTCACGGAACAAAACATGCAAGTTCCTGCTCCAGCCTGGAATATGAGCGATCACCCATTCAGAACATGCCATGGAGAGAATCCAGTCTAGATCAGCCATATCAGAAACAGAAGAAACTTCCCtctgccagcagcagcaggtcaAGcaGTCCAACAGGAACCTCAATAGACCAGAGACTTGATGACATTCCTCCTGCTCCCCAGTTTGTGTTCAAAAGCCTGGCAATGCGCAACAATAACTCCAACAGCGCCCCCTCCACCCCGAAGCTGCCACTGCGCCGCCACATCTCCCAGTCCTTCAGGTTTCCCAGGACCAAGCCAGAAGTAAGCAAACCGAGCTTAGATCTGAGCCGTGGAAGGACGAAGCTCCCGCGTCGCCGCGTCACTGACTTTGCCTTGGCTTACTCAGTGCAGCGTCTGTATCAGTGCAGCTCAGAGGACAGCAGCTCGGAGCACTCCATATCCTCCTATAGCAGCTCATCCAGCCATGAGTTAACATCTGAGGTGACCAAAGCCTGCCCTCCTCCTTACGGTTTCCACCGCACCGCTCAAAACAAGTCCCACGGCCAGTGCTCCACCACCAACATCCTTCCCAAAAACAACCAAACtgtcaacaaacaaataaacaaaccaacTGTGACCATCTCCTGTCAAGATAATAGCCATGACAGGATGTTGCCAGAGAGAGATATGAGAAAGCTGAACCTGGCTTTGACCTCCCCAAACACAAATAAGCAGCAAGTAGAGGTGACTTCACCTAAGCGTATACTTAAACCCCCTCCACCATACCACAGGCTGACTCGCACACCTTCACTGAAGGAGTATCCCAATCATCCTAGCAGGCTGCTTCCTCGAGATGTGGTGACAAAAGACCTCAGGGCCTGGCATGAGAGGAACAATGCAGGAGAACTCAAGCTTCGGCCACTGGAACGACACGGGTCTATGCGTGCTAAACGCTCACCGGATCAAGAGCCACCACCCTACCACCAGATCCAGTCTCAGAGACAGACTCCTCAGAAAGTGATCCTACAGCGAGCTCCTGATGGAACTCCTCTGCAGTGGTATGAAGAAGAAGACTGCGAGATTGTAAGTCAGGTCTAGACCACAGTCAGCTGAAATGCAGAAGCATCTTTCACCATCTTTGTTCTAtacatatctttttttaaccTATTTATTGAGCCAATGGACTCTGATGCTGTCTGATAGTAAAATGCTGACTCTGAGTAAAAGGTGAAGCTGATGGAGCACAGATTTTCACCAACTGCAGACCCCTTCATCacttaaacactgactgaaatTCAAGTCTGAGAATTACTTAACCGTAAGGCATCATGCCAAATATTCTGTGatgacaatattattattattattattattattattattattattattattattattactggtaAT

Function

NR:

description
uncharacterized protein C1orf106 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026939856.2 True 2264 mRNA 0.49 10 12985427 12994779

Neighbor

gene id symbol gene type direction distance location
c8h1orf194 c5h1orf194 coding upstream 6061 12978027 ~ 12979366 (+)
lhfpl5b lhfpl5,LOC107591869,LOC107745833,LOC102777996 coding upstream 64241 12916438 ~ 12921186 (+)
dclre1b dclre1b coding upstream 187060 12792216 ~ 12798367 (+)
adora1b adora1b,LOC108265083,LOC108414989,LOC103022582,LOC107711940,LOC107591868,LOC107680252,LOC107550463 coding upstream 202270 12775926 ~ 12783157 (+)
LOC113531715 LOC108265567,LOC108414659 coding upstream 323282 12659028 ~ 12662145 (+)
LOC113534124 NA coding downstream 60671 13055450 ~ 13061438 (+)
trnav-cac_9 NA coding downstream 67157 13061936 ~ 13062008 (+)
trnaf-gaa_25 NA coding downstream 69271 13064050 ~ 13064122 (+)
slc38a5b slc38a5,slc38a5b,LOC107745748,LOC107668060,LOC107731265,LOC107549975 coding downstream 118927 13113706 ~ 13134629 (+)
wasb was coding downstream 141910 13136689 ~ 13145207 (+)
LOC117597771 p38a,LOC104939458,LOC100692416,LOC108442382 non-coding upstream 43971 12937304 ~ 12941456 (+)
LOC117597782 NA non-coding upstream 175689 12809123 ~ 12809738 (+)
G131605 NA non-coding upstream 255905 12712625 ~ 12729522 (+)
G131606 NA non-coding upstream 272942 12690167 ~ 12712485 (+)
G131721 NA non-coding downstream 8616 13003395 ~ 13006090 (+)
G131715 LOC108265908,LOC108442391 non-coding downstream 27437 13022216 ~ 13023846 (+)
G131930 NA non-coding downstream 279356 13274135 ~ 13275095 (+)
G131954 NA non-coding downstream 320664 13315443 ~ 13315663 (+)
G131956 NA non-coding downstream 322519 13317298 ~ 13317506 (+)
rbm15 rbm15,LOC107731203 other upstream 380722 12599698 ~ 12604705 (+)
kcnq2a LOC108265949,LOC108442249,LOC107668096,LOC107550457,LOC107711924,LOC107731192,LOC107679259 other upstream 755426 12196593 ~ 12230001 (+)
foxp3a LOC108265789 other upstream 989575 11979186 ~ 11995852 (+)
porcn porcn,LOC108265120,LOC108441640,LOC107668076,LOC107585894,LOC107745789 other upstream 1271395 11705547 ~ 11714032 (+)
uck2a uck2,uck2a,LOC108441637,LOC107731246,LOC107668082,LOC107745792,LOC107585889,LOC106584056,LOC107549113,LOC107695269 other upstream 1288636 11677511 ~ 11696791 (+)
LOC113527348 LOC108266008,LOC108437580,LOC107731173,LOC107549994,LOC107745767 other downstream 710387 13705166 ~ 13791317 (+)
dock8 dock8 other downstream 895625 13890404 ~ 13948808 (+)
aopep c5h9orf3,cunh9orf3 other downstream 955158 13949937 ~ 14022687 (+)
G132595 atoh1 other downstream 1327393 14322172 ~ 14323450 (+)
commd10 commd10 other downstream 1945522 14940301 ~ 14982884 (+)

Expression


Co-expression Network