trnad-guc_1


Basic Information

Item Value
gene id trnad-guc_1
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 12381999 ~ 12382070 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnad-guc_1
TCCTCGTTAGTATAGTGGACAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCGATTCCCCGACGGGGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnad-guc_1 True 72 tRNA 0.58 1 12381999 12382070

Neighbor

gene id symbol gene type direction distance location
gnat2 gnat2,LOC108265815,LOC108442114,LOC102236489,LOC108236782,LOC107390790,LOC107591823,LOC103467179,LOC107679180,LOC106946560,LOC107731158,LOC107668040,LOC107550493 coding upstream 59123 12314904 ~ 12322876 (+)
eps8l3b LOC108265744 coding upstream 107935 12257576 ~ 12274064 (+)
atp5pb atp5f1,LOC107668113,LOC107679218,LOC107711984,LOC107731279 coding upstream 124740 12249509 ~ 12257259 (+)
prex1 prex1,LOC107731191,LOC107591805,LOC107679267,LOC107550458 coding upstream 194370 12103220 ~ 12187629 (+)
stk38a stk38,LOC108265501 coding upstream 285260 12076511 ~ 12096739 (+)
amigo1 amigo1 coding downstream 8185 12390255 ~ 12396660 (+)
sort1b LOC108265432,LOC108442120 coding downstream 32124 12414194 ~ 12433146 (+)
nfyal nfyal,nfya,LOC108265435,LOC107668092 coding downstream 56042 12438112 ~ 12447984 (+)
ahcyl1 ahcyl1,LOC107679038,LOC107591817,LOC107668032 coding downstream 68205 12450275 ~ 12475750 (+)
kcnc4 kcnc4,LOC107731196 coding downstream 96548 12478618 ~ 12509666 (+)
G131282 NA non-coding upstream 155637 12226152 ~ 12226362 (+)
G131279 NA non-coding upstream 164785 12217004 ~ 12217214 (+)
G131061 NA non-coding upstream 664114 11716832 ~ 11717885 (+)
G130960 NA non-coding upstream 829968 11548962 ~ 11552031 (+)
LOC117597850 NA non-coding upstream 1022619 11355449 ~ 11359380 (+)
LOC117597859 NA non-coding downstream 137824 12519894 ~ 12533258 (+)
G131606 NA non-coding downstream 308097 12690167 ~ 12712485 (+)
LOC117597872 NA non-coding downstream 318642 12700712 ~ 12701501 (+)
G131605 NA non-coding downstream 330555 12712625 ~ 12729522 (+)
LOC117597782 NA non-coding downstream 427053 12809123 ~ 12809738 (+)
kcnq2a LOC108265949,LOC108442249,LOC107668096,LOC107550457,LOC107711924,LOC107731192,LOC107679259 other upstream 151998 12196593 ~ 12230001 (+)
foxp3a LOC108265789 other upstream 386147 11979186 ~ 11995852 (+)
porcn porcn,LOC108265120,LOC108441640,LOC107668076,LOC107585894,LOC107745789 other upstream 667967 11705547 ~ 11714032 (+)
uck2a uck2,uck2a,LOC108441637,LOC107731246,LOC107668082,LOC107745792,LOC107585889,LOC106584056,LOC107549113,LOC107695269 other upstream 685208 11677511 ~ 11696791 (+)
LOC113530800 LOC108266038 other upstream 748155 11622302 ~ 11633844 (+)
rbm15 rbm15,LOC107731203 other downstream 217628 12599698 ~ 12604705 (+)
LOC113527348 LOC108266008,LOC108437580,LOC107731173,LOC107549994,LOC107745767 other downstream 1323096 13705166 ~ 13791317 (+)
dock8 dock8 other downstream 1508334 13890404 ~ 13948808 (+)
aopep c5h9orf3,cunh9orf3 other downstream 1567867 13949937 ~ 14022687 (+)
G132595 atoh1 other downstream 1940102 14322172 ~ 14323450 (+)

Expression


Co-expression Network